chr3 : 147,387,708 147,388,496
788 bp 83 TFs 2 linked genes
This 788 bp open chromatin element is linked to ZIC4 and ZIC1 and is bound by 83 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ZIC4 3.9 kb Proximal Proximity
ZIC1 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:147,382,708 – 147,393,496
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 406 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 209 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 424 bp overlap
BRD4 1 dataset
ChIP CHL-1 GSE95585.BRD4.CHL-1 298 bp overlap
CBX7 5 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 436 bp overlap
ChIP hESC GSE133412.CBX7.hESC 500 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 477 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 135 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 502 bp overlap
CHD7 2 datasets
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 290 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 272 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 579 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 727 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 245 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 452 bp overlap
ChIP BLaER1 ENCFF896HSY 251 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
E2F4 1 dataset
ChIP K-562 ENCSR000EWL.E2F4.K-562 131 bp overlap
E2F7 1 dataset
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
EZH2 28 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 639 bp overlap
ChIP GM23338 ENCFF613YON 788 bp overlap
ChIP GM23338 ENCFF886DXX 141 bp overlap
ChIP H1 ENCFF232NZA 788 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 218 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 464 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 445 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 490 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 594 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 162 bp overlap
ChIP astrocyte ENCFF365JTP 652 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 397 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 385 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 467 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 171 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP fibroblast of lung ENCFF479BAW 359 bp overlap
ChIP hESC GSE113817.EZH2.hESC 391 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 202 bp overlap
ChIP hepatocyte ENCFF552DZB 709 bp overlap
ChIP hepatocyte ENCFF552DZB 709 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCFF070STK 502 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 788 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 479 bp overlap
ChIP neural progenitor cell ENCFF018MKA 788 bp overlap
ChIP neural progenitor cell ENCFF472NFV 788 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 160 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 483 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 289 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 555 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 788 bp overlap
ChIP hESC GSE133412.JARID2.hESC 502 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 503 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
NANOG 6 datasets
ChIP H1 ENCFF747ZPQ 170 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 132 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 283 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 241 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 325 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 159 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PAX2 1 dataset
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap
PCGF2 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 416 bp overlap
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 482 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 91 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 222 bp overlap
PHC1 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PHC1.HEK293T_PCGF2fl 214 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 69 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 307 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
RARA 3 datasets
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 94 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 64 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 266 bp overlap
RNF2 8 datasets
ChIP H1 ENCFF239FFS 788 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 358 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.RNF2.HEK293T_PCGF1352fl_OHT 228 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 290 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 388 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 329 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 389 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 355 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMARCA4 5 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 397 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 188 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 59 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 573 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 426 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 379 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 112 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 788 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 254 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 220 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 3 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 146 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 663 bp overlap
SUZ12 18 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 392 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 183 bp overlap
ChIP H1 ENCFF881NFR 788 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 410 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 374 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 390 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 492 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 469 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 493 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 470 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 412 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 241 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 527 bp overlap
ChIP NT2/D1 ENCFF574SXS 572 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 543 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 300 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 434 bp overlap
ChIP hESC_TKO GSE133412.SUZ12.hESC_TKO 438 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 336 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 246 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap