chr1 : 59,997,576 – 59,997,925
349 bp 65 TFs 0 linked genes
This 349 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:59,992,576 – 60,002,925
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 346 bp overlap
ATF2 4 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 85 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 64 bp overlap
ChIP K562 ENCFF139ZZG 94 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 183 bp overlap
ATF7 2 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 70 bp overlap
ChIP HepG2 ENCFF470FKK 87 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD4 1 dataset
ChIP RH4 GSE83726.BRD4.RH4 284 bp overlap
Bhlha15 2 datasets
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
Motif ES_0h ES_0h-Bhlha15_MA1472.3 8 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 208 bp overlap
CREB3L4 2 datasets
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
Motif ES_0h ES_0h-CREB3L4_MA1474.2 10 bp overlap
CTCF 41 datasets
ChIP C4-2B ENCFF821XVN 349 bp overlap
ChIP GM23338 ENCFF531QOI 245 bp overlap
ChIP GM23338 ENCFF772DML 145 bp overlap
ChIP H1 ENCFF764RHO 201 bp overlap
ChIP H9 ENCFF152GTF 212 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 200 bp overlap
ChIP HCT116 ENCFF003KHP 293 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 91 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 131 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 131 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 210 bp overlap
ChIP MCF-7 ENCFF139NQI 201 bp overlap
ChIP MCF-7 ENCFF198DQX 188 bp overlap
ChIP MCF-7 ENCFF494VXA 188 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 221 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 176 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 141 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 222 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 117 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 153 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 185 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 128 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 242 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 117 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 185 bp overlap
ChIP endodermal cell ENCFF471YCZ 178 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 200 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 140 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 286 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 139 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 162 bp overlap
ChIP keratinocyte ENCFF667ULX 224 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 183 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 234 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 177 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 146 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 160 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 303 bp overlap
ChIP thyroid gland ENCFF631QRY 245 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 256 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 150 bp overlap
ELK1::HOXB13 1 dataset
Motif ES_0h ES_0h-ELK1HOXB13_MA1932.2 15 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 120 bp overlap
ERF::HOXB13 1 dataset
Motif ES_0h ES_0h-ERFHOXB13_MA1937.2 13 bp overlap
ESR1 4 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 155 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 141 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 174 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 151 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
GRHL2 2 datasets
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 243 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 147 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 212 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HOXD12::ELK1 1 dataset
Motif ES_0h ES_0h-HOXD12ELK1_MA1958.2 13 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 63 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
MAX 1 dataset
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 261 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 336 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 299 bp overlap
MYF5 2 datasets
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
Motif ES_0h ES_0h-MYF5_MA1641.2 8 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 124 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 144 bp overlap
Neurod2 4 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 281 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 192 bp overlap
ChIP H1 ENCFF967OJF 177 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 115 bp overlap
ChIP Ishikawa ENCFF570JVV 194 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 172 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 106 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 176 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 100 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 111 bp overlap
RNF2 2 datasets
ChIP fibroblast GSE139053.RNF2.fibroblast 144 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 130 bp overlap
SMARCA4 1 dataset
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 75 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 233 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 178 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 216 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 125 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 119 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 7 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 100 bp overlap
ChIP Ishikawa ENCFF772OTG 240 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 208 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 219 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 217 bp overlap
TP53 1 dataset
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 98 bp overlap
TP63 1 dataset
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 179 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
YY1 2 datasets
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 146 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 174 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 349 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 256 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
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