chr3 : 84,904,871 – 84,905,399

528 bp 82 TFs 0 linked genes

This 528 bp open chromatin element has no linked target genes and is bound by 82 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

82 transcription factors

AR 3 datasets

ChIP LNCaP GSE80256.AR.LNCaP 186 bp overlap

ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 186 bp overlap

ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 506 bp overlap

ARNT 1 dataset

ChIP 501-mel GSE95280.ARNT.501-mel 418 bp overlap

ASCL1 2 datasets

ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 240 bp overlap

ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 161 bp overlap

BHLHE40 2 datasets

ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 188 bp overlap

ChIP HepG2 ENCFF961RID 294 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 249 bp overlap

BRD2 1 dataset

ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 146 bp overlap

BRD4 6 datasets

ChIP COLO-741 GSE73319.BRD4.COLO-741 248 bp overlap

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 197 bp overlap

ChIP MCF-10A ERP003925.BRD4.MCF-10A 273 bp overlap

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 528 bp overlap

ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 398 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 136 bp overlap

CDX2 1 dataset

ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 464 bp overlap

CHD4 1 dataset

ChIP RH5 GSE155861.CHD4.RH5 259 bp overlap

CHD8 1 dataset

ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 89 bp overlap

CLOCK 1 dataset

ChIP U2OS GSE44236.CLOCK.U2OS 191 bp overlap

CRY1 1 dataset

ChIP U2OS GSE44236.CRY1.U2OS 238 bp overlap

CTCF 6 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 381 bp overlap

ChIP RH4 GSE83726.CTCF.RH4 177 bp overlap

ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 470 bp overlap

ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 520 bp overlap

ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 528 bp overlap

ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 347 bp overlap

E2F1 1 dataset

ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 161 bp overlap

EGR1 1 dataset

ChIP T-HESCs GSE141063.EGR1.T-HESCs 219 bp overlap

ESR1 4 datasets

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 390 bp overlap

ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 276 bp overlap

ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 348 bp overlap

ChIP T-47D ENCSR000BJS.ESR1.T-47D 60 bp overlap

ETV2::FIGLA 1 dataset

Motif ES_0h ES_0h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV5::FIGLA 1 dataset

Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap

EZH1 1 dataset

ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 241 bp overlap

EZH2 1 dataset

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 88 bp overlap

FIGLA 1 dataset

Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 333 bp overlap

FOXO1-PAX3 2 datasets

ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 528 bp overlap

ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 528 bp overlap

HDAC2 2 datasets

ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 511 bp overlap

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 489 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 444 bp overlap

HIVEP1 1 dataset

ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 477 bp overlap

HNF4A 2 datasets

ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 195 bp overlap

ChIP HepG2 ENCFF146SSF 281 bp overlap

HNRNPL 2 datasets

ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 221 bp overlap

ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 221 bp overlap

KDM5B 1 dataset

ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 454 bp overlap

KLF1 1 dataset

Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap

KLF2 1 dataset

Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap

KLF4 1 dataset

Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap

KLF5 1 dataset

Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap

KLF9 2 datasets

Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 100 bp overlap

MAX 3 datasets

ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 268 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 195 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 373 bp overlap

MAZ 1 dataset

Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap

MECOM 1 dataset

ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 129 bp overlap

MNX1 1 dataset

ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 97 bp overlap

MSC 1 dataset

Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 443 bp overlap

MYC 1 dataset

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 234 bp overlap

MYCN 2 datasets

ChIP CHP-134 GSE129588.MYCN.CHP-134 207 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 468 bp overlap

MYF5 1 dataset

ChIP Rh18 GSE84628.MYF5.Rh18 180 bp overlap

MYF6 1 dataset

Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap

MYOD1 7 datasets

Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap

ChIP RD GSE137168.MYOD1.RD 241 bp overlap

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 308 bp overlap

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 295 bp overlap

ChIP RH4 GSE83726.MYOD1.RH4 435 bp overlap

ChIP myoblast GSE50413.MYOD1.myoblast 250 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 258 bp overlap

MYOG 4 datasets

ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 127 bp overlap

ChIP RH4 GSE83726.MYOG.RH4 287 bp overlap

ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 266 bp overlap

ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 386 bp overlap

NCOA2 1 dataset

ChIP MCF-7 ERP000901.NCOA2.MCF-7 109 bp overlap

OLIG2 1 dataset

ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 245 bp overlap

PATZ1 1 dataset

Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap

PAX3-FOXO1 2 datasets

ChIP Hs-352-Sk GSE83725.PAX3-FOXO1.Hs-352-Sk 188 bp overlap

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 528 bp overlap

PCBP1 2 datasets

ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 195 bp overlap

ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 188 bp overlap

POU5F1 2 datasets

ChIP BG03 GSE21614.POU5F1.BG03 164 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 160 bp overlap

Ptf1A 1 dataset

Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap

RAD21 1 dataset

ChIP RH4 GSE83726.RAD21.RH4 426 bp overlap

RBBP4 2 datasets

ChIP RH5 GSE155861.RBBP4.RH5 142 bp overlap

ChIP SCMC GSE155861.RBBP4.SCMC 231 bp overlap

RBPJ 1 dataset

Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap

RUNX1 1 dataset

ChIP Jurkat GSE85524.RUNX1.Jurkat 177 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 186 bp overlap

SCRT1 1 dataset

Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap

SCRT2 1 dataset

Motif ES_0h ES_0h-SCRT2_MA0744.3 10 bp overlap

SMARCA4 1 dataset

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 389 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 219 bp overlap

SNAI2 2 datasets

Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap

ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 292 bp overlap

SOX8 3 datasets

ChIP RH4 GSE116344.SOX8.RH4 528 bp overlap

ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 202 bp overlap

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 140 bp overlap

SPI1 1 dataset

ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 226 bp overlap

TAL1::TCF3 1 dataset

Motif ES_0h ES_0h-TAL1TCF3_MA0091.2 10 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 266 bp overlap

TFAP4 1 dataset

Motif ES_0h ES_0h-TFAP4_MA1570.1 10 bp overlap

TP63 1 dataset

ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 180 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 242 bp overlap

Tcf21 1 dataset

Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap

Tfcp2l1 1 dataset

Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap

YY1 2 datasets

ChIP HEK293T_control GSE128106.YY1.HEK293T_control 349 bp overlap

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 528 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 437 bp overlap

ZEB1 1 dataset

Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap

ZNF143 1 dataset

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF407 1 dataset

ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 142 bp overlap

ZNF572 1 dataset

ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 230 bp overlap

ZNF883 1 dataset

ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 115 bp overlap

ZNF891 1 dataset

ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 218 bp overlap

Zfp809 1 dataset

Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap