chr3 : 73,708,265 – 73,708,857
592 bp 87 TFs 0 linked genes
This 592 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:73,703,265 – 73,713,857
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ATF2 2 datasets
Motif DE_48h DE_48h-ATF2_MA1632.2 10 bp overlap
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
BCL11A 1 dataset
Motif DE_60h DE_60h-BCL11A_MA2324.1 7 bp overlap
CREB1 2 datasets
Motif DE_48h DE_48h-CREB1_MA0018.5 8 bp overlap
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 228 bp overlap
DMRTA2 2 datasets
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 161 bp overlap
ESR1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 233 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
FIGLA 3 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 219 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 205 bp overlap
ChIP DE DE-FOXA2-1 480 bp overlap
ChIP DE DE-FOXA2-2 451 bp overlap
GATA2 7 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP ESF GSE108408.GATA2.ESF 211 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 200 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 146 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 206 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 150 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 171 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 163 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 219 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 226 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 239 bp overlap
ChIP SK-N-SH ENCFF040SSB 313 bp overlap
GATA4 9 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 179 bp overlap
ChIP DE DE-GATA4-1 524 bp overlap
ChIP DE DE-GATA4-2 592 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 320 bp overlap
ChIP foregut GSE117136.GATA4.foregut 315 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 347 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 324 bp overlap
GATA5 2 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 178 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 217 bp overlap
ChIP DE DE-GATA6-1 579 bp overlap
ChIP DE DE-GATA6-2 494 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 468 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 383 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 377 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 555 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 384 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 377 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 382 bp overlap
ChIP foregut GSE117136.GATA6.foregut 331 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 325 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 291 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 265 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
HDAC3 1 dataset
ChIP AML GSE131939.HDAC3.AML 150 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 79 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
JUN 7 datasets
Motif DE_48h DE_48h-JUN_MA0488.2 10 bp overlap
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 347 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 330 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 377 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 347 bp overlap
JUND 2 datasets
Motif DE_48h DE_48h-JUND_MA0492.2 11 bp overlap
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
Lhx3 1 dataset
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MAFF 2 datasets
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 92 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 96 bp overlap
MYOD1 1 dataset
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
Mafb 1 dataset
Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NFKB1 1 dataset
Motif DE_60h DE_60h-NFKB1_MA0105.4 13 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_60h DE_60h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2C1 2 datasets
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR4A2::RXRA 1 dataset
Motif DE_60h DE_60h-NR4A2RXRA_MA1147.2 13 bp overlap
NRL 1 dataset
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
Nr1H2 2 datasets
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr2e1 1 dataset
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
PKNOX2 1 dataset
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
PPARA::RXRA 1 dataset
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 381 bp overlap
PRDM9 2 datasets
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 2 datasets
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
Runx1 1 dataset
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SCRT1 2 datasets
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 294 bp overlap
SCRT2 1 dataset
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 500 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 292 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 330 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 292 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 302 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 466 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 487 bp overlap
SNAI2 3 datasets
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
SNAI3 2 datasets
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 313 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 373 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 146 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TCF7 1 dataset
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 265 bp overlap
TGIF1 1 dataset
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 286 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 592 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 3 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF135 2 datasets
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF184 1 dataset
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF257 1 dataset
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF460 1 dataset
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF652 1 dataset
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF675 1 dataset
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
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