chr3 : 58,842,516 – 58,842,898
382 bp 78 TFs 0 linked genes
This 382 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:58,837,516 – 58,847,898
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 297 bp overlap
CTCF 5 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP placenta ENCFF029PHY 378 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 327 bp overlap
EGR1 2 datasets
ChIP K562 ENCFF113OPQ 160 bp overlap
ChIP K562 ENCFF895KGN 126 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 382 bp overlap
ETV1 3 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FEZF2 3 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 325 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif DE_24h DE_24h-ISL2_MA0914.2 6 bp overlap
Ikzf3 3 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
KDM5B 1 dataset
ChIP K562 ENCFF049WWX 222 bp overlap
KLF10 2 datasets
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF12 2 datasets
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 2 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF4 3 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 5 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 329 bp overlap
MAZ 2 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MNT 1 dataset
ChIP K562 ENCFF820IGH 382 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF788MPU 340 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 321 bp overlap
NR2C1 1 dataset
ChIP K562 ENCFF239KMA 326 bp overlap
NR2C2 2 datasets
ChIP K562 ENCFF750AXF 122 bp overlap
ChIP K562 ENCFF750AXF 382 bp overlap
NRF1 2 datasets
ChIP K562 ENCFF689EWI 267 bp overlap
ChIP K562 ENCFF791UHF 68 bp overlap
Nkx3-2 1 dataset
Motif DE_24h DE_24h-Nkx3-2_MA0122.4 10 bp overlap
PATZ1 2 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PHF8 1 dataset
ChIP K562 ENCFF217UCA 382 bp overlap
PKNOX2 1 dataset
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 321 bp overlap
ChIP K562 ENCFF215CWW 382 bp overlap
ChIP K562 ENCFF262YXJ 352 bp overlap
ChIP K562 ENCFF836GHX 58 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 67 bp overlap
ChIP K562 ENCFF047BLG 282 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 123 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 382 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 374 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF967GRF 128 bp overlap
ChIP K562 ENCFF967GRF 317 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 244 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 277 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 280 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 340 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 251 bp overlap
SMAD4 2 datasets
ChIP K562 ENCFF628RBP 340 bp overlap
ChIP K562 ENCFF628RBP 374 bp overlap
SOX10 3 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 131 bp overlap
SOX4 3 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
SP2 2 datasets
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP3 2 datasets
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP8 2 datasets
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
Sox11 3 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif DE_24h DE_24h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox6 3 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_24h DE_24h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
TAF1 1 dataset
ChIP K562 ENCFF491WAE 146 bp overlap
TAF9B 1 dataset
ChIP K562 ENCFF121ZIF 209 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 382 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
Wt1 3 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 270 bp overlap
ChIP Ishikawa ENCFF505XQX 247 bp overlap
ChIP K562 ENCFF199FNC 255 bp overlap
ChIP K562 ENCFF660QRE 107 bp overlap
YY2 3 datasets
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
Motif DE_24h DE_24h-YY2_MA0748.3 7 bp overlap
Motif ES_0h ES_0h-YY2_MA0748.3 7 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF795CMH 230 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 382 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF148 3 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ChIP K562 ENCFF352SDL 382 bp overlap
ZNF213 3 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF281 6 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ChIP K562 ENCFF594VNM 272 bp overlap
ChIP WTC11 ENCFF551GAV 262 bp overlap
ZNF530 2 datasets
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap
ZNF610 2 datasets
Motif DE_24h DE_24h-ZNF610_MA1713.2 10 bp overlap
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF85 1 dataset
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Zfp961 3 datasets
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
Motif DE_24h DE_24h-Zfp961_MA2126.1 8 bp overlap
Motif ES_0h ES_0h-Zfp961_MA2126.1 8 bp overlap
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