chr2 : 241,901,852 241,902,324
472 bp 63 TFs 1 linked gene
This 472 bp open chromatin element is linked to FAM240C and is bound by 63 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FAM240C 226 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:241,896,852 – 241,907,324
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP GSE148358.AR.VCaP 430 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 247 bp overlap
ARNT 2 datasets
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 358 bp overlap
ChIP RCC4 GSE85352.ARNT.RCC4 180 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 343 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 196 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 163 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 472 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 472 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 355 bp overlap
BRD4 7 datasets
ChIP VCaP GSE148358.BRD4.VCaP 350 bp overlap
ChIP VCaP_Darolutamide GSE148358.BRD4.VCaP_Darolutamide 301 bp overlap
ChIP VCaP_R1881 GSE148358.BRD4.VCaP_R1881 345 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 159 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 472 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 166 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 408 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 472 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 354 bp overlap
CHD4 1 dataset
ChIP keratinocyte_CTR GSE139685.CHD4.keratinocyte_CTR 90 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 182 bp overlap
ChIP H1 ENCFF955PMP 281 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 277 bp overlap
CTCF 69 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 271 bp overlap
ChIP H9 ENCFF152GTF 351 bp overlap
ChIP SiHa GSE143026.CTCF.SiHa 110 bp overlap
ChIP VCaP ENCFF858YQT 234 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 345 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 94 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 182 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 281 bp overlap
ChIP body of pancreas ENCFF798MEO 258 bp overlap
ChIP body of pancreas ENCFF881RGF 236 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 166 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 229 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 157 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 175 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 246 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 223 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 218 bp overlap
ChIP endodermal cell ENCFF471YCZ 368 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 221 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 140 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 312 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 113 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 348 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 288 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR443WKD.CTCF.esophagus-muscularis-mucosa 262 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 330 bp overlap
ChIP gastroesophageal sphincter ENCFF125ESZ 388 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 162 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 394 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 327 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 419 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 268 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 232 bp overlap
ChIP hepatocyte ENCFF263BLJ 300 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 359 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 268 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 438 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 222 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 172 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 149 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 241 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 145 bp overlap
ChIP pancreas ENCSR687APM.CTCF.pancreas 252 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 298 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 293 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 211 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 107 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 210 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 350 bp overlap
ChIP prostate gland ENCFF655GBO 262 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 389 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 282 bp overlap
ChIP prostate_gland ENCSR829HTO.CTCF.prostate_gland 234 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 255 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 235 bp overlap
ChIP right atrium auricular region ENCFF696NTN 400 bp overlap
ChIP skin ENCSR485VQV.CTCF.skin 208 bp overlap
ChIP thyroid gland ENCFF204HWS 284 bp overlap
ChIP thyroid gland ENCFF300RYK 370 bp overlap
ChIP thyroid gland ENCFF631QRY 352 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 324 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 313 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 243 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 220 bp overlap
ChIP uterus ENCFF631BWF 305 bp overlap
ChIP uterus ENCSR527TPP.CTCF.uterus 290 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 338 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 288 bp overlap
ESR1 7 datasets
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 269 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 231 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 203 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 327 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 294 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 324 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 296 bp overlap
EZH2 20 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 362 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 207 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 315 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 345 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 340 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 340 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 398 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 324 bp overlap
ChIP astrocyte ENCFF365JTP 207 bp overlap
ChIP astrocyte ENCFF365JTP 92 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 441 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 472 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 414 bp overlap
ChIP fibroblast of lung ENCFF479BAW 472 bp overlap
ChIP fibroblast of lung ENCFF479BAW 96 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 417 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 378 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 194 bp overlap
ChIP neural progenitor cell ENCFF472NFV 472 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 351 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT967 GSE128230.FOS.leiomyoma_PT967 85 bp overlap
GABPA 2 datasets
ChIP WA01 ENCSR000BIW.GABPA.WA01 219 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 143 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 228 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 265 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 330 bp overlap
HOXB13 1 dataset
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 258 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 253 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 134 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 203 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 208 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 472 bp overlap
KLF5 1 dataset
ChIP HCC95_E419Q GSE88976.KLF5.HCC95_E419Q 59 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 238 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP Ishikawa ENCFF064TDQ 356 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 217 bp overlap
MED1 4 datasets
ChIP VCaP GSE148358.MED1.VCaP 387 bp overlap
ChIP VCaP_Darolutamide GSE148358.MED1.VCaP_Darolutamide 228 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 472 bp overlap
ChIP VCaP_Veh GSE125245.MED1.VCaP_Veh 318 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 228 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 293 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 205 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 117 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 472 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 222 bp overlap
POLR2A 9 datasets
ChIP GM23338 ENCFF450WCS 352 bp overlap
ChIP body of pancreas ENCFF501FEC 367 bp overlap
ChIP body of pancreas ENCFF675RCN 472 bp overlap
ChIP body of pancreas ENCFF727UBE 261 bp overlap
ChIP prostate gland ENCFF881OMH 171 bp overlap
ChIP spleen ENCFF446ZGT 277 bp overlap
ChIP spleen ENCFF446ZGT 361 bp overlap
ChIP thyroid gland ENCFF979LRR 472 bp overlap
ChIP vagina ENCFF384GAB 453 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 472 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 348 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 472 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 433 bp overlap
RELA 3 datasets
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 80 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 92 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 155 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 472 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 271 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 238 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 265 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 413 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 338 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 236 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 375 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 366 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 280 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 254 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 231 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 100 bp overlap
ChIP HCC70 GSE126380.SREBP2.HCC70 184 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 112 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 472 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 216 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 213 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 178 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 349 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 377 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 232 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 236 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 434 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 364 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 88 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 138 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 341 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 277 bp overlap
TP53 3 datasets
ChIP H9 GSE142050.TP53.H9 151 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 354 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 60 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 90 bp overlap
ZBTB7A 1 dataset
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 205 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 118 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 180 bp overlap