chr2 : 182,426,436 182,427,103
667 bp 69 TFs 1 linked gene
This 667 bp open chromatin element is linked to PDE1A and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PDE1A at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:182,421,436 – 182,432,103
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 667 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 667 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 131 bp overlap
AHR 1 dataset
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 167 bp overlap
AR 5 datasets
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 171 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 254 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 124 bp overlap
ChIP prostate_P1_T GSE130408.AR.prostate_P1_T 188 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 254 bp overlap
ARNTL 2 datasets
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 202 bp overlap
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 182 bp overlap
ARRB1 1 dataset
ChIP prostate GSE55615.ARRB1.prostate 135 bp overlap
BRD4 2 datasets
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 340 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 398 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 190 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 182 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 141 bp overlap
CTCF 2 datasets
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 218 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 94 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 316 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 307 bp overlap
ELL2 4 datasets
ChIP HeLa GSE40632.ELL2.HeLa 460 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 418 bp overlap
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 209 bp overlap
ChIP HeLa_EGF GSE40632.ELL2.HeLa_EGF 116 bp overlap
EP300 2 datasets
ChIP AML GSE131939.EP300.AML 143 bp overlap
ChIP AML_shaml1-eto GSE131939.EP300.AML_shaml1-eto 156 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 354 bp overlap
ESR1 6 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 168 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 135 bp overlap
ChIP Ishikawa ENCSR000BIZ.ESR1.Ishikawa 118 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 102 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 78 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 93 bp overlap
ETV1 3 datasets
ChIP GIST GSE22441.ETV1.GIST 194 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 191 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 119 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 482 bp overlap
FOXA1 5 datasets
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 106 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 211 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 243 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 111 bp overlap
ChIP prostate_P29_T GSE130408.FOXA1.prostate_P29_T 162 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 340 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 211 bp overlap
GRHL2 4 datasets
ChIP HBE GSE46194.GRHL2.HBE 108 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 97 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 160 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 145 bp overlap
GTF2B 1 dataset
ChIP HeLa_ASYNC GSE71848.GTF2B.HeLa_ASYNC 384 bp overlap
HOXB13 13 datasets
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 132 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 186 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 133 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 115 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 72 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 51 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 91 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 74 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 69 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 112 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 258 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 207 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 102 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 232 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 81 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 197 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 287 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 291 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 421 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 354 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 236 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 269 bp overlap
MAX 1 dataset
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 130 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 56 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 119 bp overlap
MYNN 3 datasets
ChIP HEK293 ENCFF897QZG 173 bp overlap
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 384 bp overlap
ChIP HEK293 GSE76494.MYNN.HEK293 135 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 78 bp overlap
NELFA 4 datasets
ChIP HeLa_1h-Flavo-0-H2O2 GSE93931.NELFA.HeLa_1h-Flavo-0-H2O2 400 bp overlap
ChIP HeLa_40min-Flavo-PJ34-0-H2O2 GSE93931.NELFA.HeLa_40min-Flavo-PJ34-0-H2O2 301 bp overlap
ChIP HeLa_Flavo-0-H2O2 GSE100742.NELFA.HeLa_Flavo-0-H2O2 402 bp overlap
ChIP HeLa_Flavo-PJ34-0-H2O2 GSE100742.NELFA.HeLa_Flavo-PJ34-0-H2O2 301 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 562 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 227 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 272 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BJR.NR3C1.A-549 129 bp overlap
ChIP THP-1_Dex GSE99887.NR3C1.THP-1_Dex 318 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 321 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 300 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PGR 2 datasets
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 204 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 155 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 667 bp overlap
POLR2A 7 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 76 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 199 bp overlap
ChIP sigmoid colon ENCFF653CQA 343 bp overlap
ChIP sigmoid colon ENCFF748YVT 310 bp overlap
ChIP sigmoid colon ENCFF754JQR 106 bp overlap
ChIP thyroid gland ENCFF979LRR 320 bp overlap
ChIP transverse colon ENCFF610RWV 50 bp overlap
RUNX1 2 datasets
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 314 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 457 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 159 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR513XQX.SIN3A.A-549 236 bp overlap
SMARCA4 6 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 417 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 326 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 474 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 461 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 290 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 267 bp overlap
SMARCC1 2 datasets
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 311 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 279 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 250 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 152 bp overlap
SPI1 2 datasets
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 422 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 428 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 187 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 187 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 346 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 443 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 302 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 345 bp overlap
TFAP4 1 dataset
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 533 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 376 bp overlap
ChIP HEK293 ENCFF582MWI 593 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 84 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 561 bp overlap
ZIM3 1 dataset
ChIP HEK293 GSE76494.ZIM3.HEK293 167 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 612 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 261 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap