chr2 : 101,983,358 101,983,839
481 bp 66 TFs 1 linked gene
This 481 bp open chromatin element is linked to LINC01127 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01127 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:101,978,358 – 101,988,839
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 3 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 281 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 189 bp overlap
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 224 bp overlap
ARID1A 4 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 481 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 440 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 481 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 480 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 323 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 191 bp overlap
BRD4 2 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 304 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 248 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 146 bp overlap
CEBPB 2 datasets
ChIP Ishikawa ENCFF010USJ 261 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 218 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 409 bp overlap
CTCF 4 datasets
ChIP 22Rv1 ENCFF466OXN 63 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 134 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 100 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 264 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 226 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 58 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 251 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 283 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 402 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 441 bp overlap
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 391 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 54 bp overlap
ESR1 35 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 324 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 309 bp overlap
ChIP Ishikawa GSE99905.ESR1.Ishikawa 301 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 271 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 481 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 481 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 481 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 481 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 471 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 364 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 481 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 375 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 258 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 481 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 481 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 481 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 313 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 322 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 279 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 405 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 436 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 321 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 481 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 481 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 481 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 481 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 239 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 327 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 314 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 225 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 271 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 220 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 232 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 481 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 216 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 381 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 351 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 331 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 355 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 208 bp overlap
FOS 5 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 161 bp overlap
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 74 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 158 bp overlap
ChIP MCF-7 ENCFF282FWZ 396 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 319 bp overlap
FOSL2 3 datasets
ChIP MCF-7 ENCFF188KBZ 454 bp overlap
ChIP MCF-7 ENCFF716UWP 291 bp overlap
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 137 bp overlap
FOXA1 6 datasets
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 373 bp overlap
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 206 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 274 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 174 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 346 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 263 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 192 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 334 bp overlap
ChIP DE DE-FOXA2-1 423 bp overlap
ChIP DE DE-FOXA2-2 431 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 220 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 345 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 372 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 479 bp overlap
FOXM1 2 datasets
ChIP Ishikawa ENCFF578VDD 362 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 408 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 267 bp overlap
ChIP DE DE-GATA4-1 330 bp overlap
ChIP DE DE-GATA4-2 343 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 291 bp overlap
ChIP DE DE-GATA6-2 324 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 286 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 274 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 255 bp overlap
HOXB13 2 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 145 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 202 bp overlap
JUN 7 datasets
ChIP 786-O GSE86092.JUN.786-O 289 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 287 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 481 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 390 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 342 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 478 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 299 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 243 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 194 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 217 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 341 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 399 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 387 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 232 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 347 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 390 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 270 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 280 bp overlap
NR3C1 4 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 337 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 344 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.NR3C1.Ishikawa_Dex_E2 357 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 164 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 219 bp overlap
POLR2A 3 datasets
ChIP prostate gland ENCFF881OMH 186 bp overlap
ChIP thyroid gland ENCFF979LRR 142 bp overlap
ChIP vagina ENCFF305NWS 384 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 299 bp overlap
RAD21 5 datasets
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 260 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 268 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 195 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 194 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 80 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 335 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 431 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 333 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 364 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 412 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 357 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 355 bp overlap
REST 2 datasets
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP neural ENCSR000BTV.REST.neural 197 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 182 bp overlap
SIN3A 1 dataset
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 113 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 318 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 481 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 263 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 481 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 295 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 196 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 257 bp overlap
SMARCA4 10 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 392 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 66 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 257 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 481 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 190 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 168 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 204 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 266 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 481 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 382 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 240 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.SMARCB1.RMG-I_ARID1A-KO 180 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 242 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 340 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 243 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 303 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 387 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 325 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 342 bp overlap
ChIP KNS-62 GSE137459.SOX2.KNS-62 310 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 236 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 272 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
SRF 2 datasets
ChIP Ishikawa ENCFF992QXM 305 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 264 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 313 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 252 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 401 bp overlap
STAT3 1 dataset
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 266 bp overlap
TAF1 1 dataset
ChIP Ishikawa ENCSR000BTO.TAF1.Ishikawa 113 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 405 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 445 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 175 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 235 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 249 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 138 bp overlap
TEAD4 12 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 187 bp overlap
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 172 bp overlap
ChIP Ishikawa ENCFF772OTG 270 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 390 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 248 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 224 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 251 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 334 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 318 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 366 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 187 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 223 bp overlap
USF1 1 dataset
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 201 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 296 bp overlap
YY1 2 datasets
ChIP Ishikawa ENCFF505XQX 287 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 319 bp overlap
YY1AP1 2 datasets
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 240 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 279 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCFF191NFH 446 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 253 bp overlap