chr2 : 41,871,079 – 41,871,643
564 bp 76 TFs 1 linked gene
This 564 bp open chromatin element is linked to RNU4-63P and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNU4-63P at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:41,866,079 – 41,876,643
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 286 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 564 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 227 bp overlap
BCL11A 2 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BRD3 1 dataset
ChIP A-549 GSE119863.BRD3.A-549 295 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 407 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 273 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 357 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 141 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 256 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 390 bp overlap
CTCF 338 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 372 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 330 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 260 bp overlap
ChIP A-549 ENCSR000DYD.CTCF.A-549 140 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 420 bp overlap
ChIP A549 ENCFF434LUY 245 bp overlap
ChIP A673 ENCFF123WOM 441 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG04450 ENCFF116DJL 297 bp overlap
ChIP AG09309 ENCFF478XPS 277 bp overlap
ChIP AG09319 ENCFF401ZTN 277 bp overlap
ChIP AG10803 ENCFF549AQK 257 bp overlap
ChIP ASC GSE21366.CTCF.ASC 263 bp overlap
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 274 bp overlap
ChIP BJ ENCFF434HEC 311 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 281 bp overlap
ChIP Caco-2 ENCFF753NZV 445 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 110 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 140 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DND-41 ENCFF913MRA 317 bp overlap
ChIP DND-41 ENCFF913MRA 215 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 204 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF531QOI 262 bp overlap
ChIP GM23338 ENCFF772DML 92 bp overlap
ChIP GM23338 ENCFF832KWE 557 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 144 bp overlap
ChIP H9 ENCFF152GTF 378 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 312 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 260 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 309 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 289 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 136 bp overlap
ChIP HFF-Myc ENCFF680WYR 377 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 425 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCFF626XQK 251 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 499 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 131 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 104 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 329 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 293 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 245 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 153 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 103 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 233 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 119 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 298 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 300 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 230 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 114 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 184 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 252 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 414 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 227 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF598YSU 271 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 224 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 168 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 372 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 150 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 153 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 228 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 220 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 313 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 331 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 160 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 284 bp overlap
ChIP PC-9 ENCFF539ULB 469 bp overlap
ChIP Peyer's patch ENCFF701KWW 351 bp overlap
ChIP Peyer's patch ENCFF746TCR 357 bp overlap
ChIP Peyer's patch ENCFF828IDE 341 bp overlap
ChIP Peyer's patch ENCFF849HUG 257 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 244 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 270 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 211 bp overlap
ChIP Peyers-patch ENCSR391ZKN.CTCF.Peyers-patch 200 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 515 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 126 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 102 bp overlap
ChIP SK-N-SH ENCFF575DMG 465 bp overlap
ChIP SK-N-SH ENCFF731NJX 251 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 293 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 200 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 159 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 104 bp overlap
ChIP U2OS_interphase GSE141081.CTCF.U2OS_interphase 231 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 173 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 178 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 183 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 208 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 192 bp overlap
ChIP WI-38 ENCSR000DYB.CTCF.WI-38 227 bp overlap
ChIP WI38 ENCFF841AXJ 317 bp overlap
ChIP adrenal gland ENCFF257AUK 485 bp overlap
ChIP adrenal gland ENCFF282ZUL 345 bp overlap
ChIP adrenal gland ENCFF678WUB 311 bp overlap
ChIP adrenal gland ENCFF886WNR 501 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 344 bp overlap
ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 200 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 283 bp overlap
ChIP adrenal-gland ENCSR014GSQ.CTCF.adrenal-gland 179 bp overlap
ChIP aorta_ascending ENCSR960MDF.CTCF.aorta_ascending 208 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 516 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 355 bp overlap
ChIP ascending aorta ENCFF138DXQ 385 bp overlap
ChIP ascending aorta ENCFF440JQB 345 bp overlap
ChIP ascending aorta ENCFF451CCT 213 bp overlap
ChIP ascending-aorta ENCSR555DCD.CTCF.ascending-aorta 282 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 288 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 242 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 345 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 261 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 504 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 202 bp overlap
ChIP brain ENCFF067KUH 533 bp overlap
ChIP brain ENCFF163BBN 398 bp overlap
ChIP brain ENCFF163BBN 198 bp overlap
ChIP brain ENCFF685VRG 296 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 175 bp overlap
ChIP breast_epithelium ENCSR697YIN.CTCF.breast_epithelium 279 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 265 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 167 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 365 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 459 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 418 bp overlap
ChIP cardiac_right-atrium-auricular-region ENCSR066GBX.CTCF.cardiac_right-atrium-auricular-region 284 bp overlap
ChIP chondrocyte ENCFF134ORZ 564 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 183 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 397 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 349 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 286 bp overlap
ChIP coronary artery ENCFF483TFF 341 bp overlap
ChIP coronary-artery ENCSR175FLL.CTCF.coronary-artery 450 bp overlap
ChIP endodermal cell ENCFF471YCZ 403 bp overlap
ChIP endodermal cell ENCFF471YCZ 299 bp overlap
ChIP endothelial cell ENCFF663LIE 512 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 261 bp overlap
ChIP endothelial cell of umbilical vein ENCFF947JAB 381 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 528 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 212 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 261 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 331 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 274 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 117 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 361 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 242 bp overlap
ChIP esophagus muscularis mucosa ENCFF182PYY 351 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 417 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 261 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 220 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR074SFL.CTCF.esophagus_muscularis-mucosa 235 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 173 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 197 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 111 bp overlap
ChIP fibroblast of lung ENCFF356FDN 317 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 261 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 265 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 297 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 217 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 178 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 446 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 327 bp overlap
ChIP fibroblast_DERMAL ENCSR000APM.CTCF.fibroblast_DERMAL 194 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 272 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 311 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 234 bp overlap
ChIP fibroblast_LUNG ENCSR000DVA.CTCF.fibroblast_LUNG 344 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 351 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 249 bp overlap
ChIP fibroblast_LUNG ENCSR000ANO.CTCF.fibroblast_LUNG 191 bp overlap
ChIP fibroblast_MAMMARY ENCSR000DUU.CTCF.fibroblast_MAMMARY 173 bp overlap
ChIP fibroblast_PEDAL_DIGIT_SKIN ENCSR000DPP.CTCF.fibroblast_PEDAL_DIGIT_SKIN 126 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 368 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 267 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 279 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 564 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 325 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 321 bp overlap
ChIP gastrocnemius medialis ENCFF307PRR 457 bp overlap
ChIP gastrocnemius-medialis ENCSR428BKN.CTCF.gastrocnemius-medialis 239 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 208 bp overlap
ChIP gastroesophageal sphincter ENCFF125ESZ 129 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 457 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 445 bp overlap
ChIP gastroesophageal sphincter ENCFF918KPI 337 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 383 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 326 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 263 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 160 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 228 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 564 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 242 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 341 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 436 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 564 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 256 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 325 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 418 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 323 bp overlap
ChIP heart ENCSR401KRN.CTCF.heart 242 bp overlap
ChIP heart ENCSR565HBN.CTCF.heart 244 bp overlap
ChIP heart left ventricle ENCFF185CKY 411 bp overlap
ChIP heart left ventricle ENCFF244ZHV 437 bp overlap
ChIP heart left ventricle ENCFF354HOQ 220 bp overlap
ChIP heart left ventricle ENCFF548XHH 96 bp overlap
ChIP heart left ventricle ENCFF575JEQ 461 bp overlap
ChIP heart left ventricle ENCFF663LEI 437 bp overlap
ChIP heart left ventricle ENCFF769GAB 485 bp overlap
ChIP heart left ventricle ENCFF842XRG 411 bp overlap
ChIP heart left ventricle ENCFF888ERQ 477 bp overlap
ChIP heart left ventricle ENCFF987PUT 371 bp overlap
ChIP heart right ventricle ENCFF022KFI 471 bp overlap
ChIP heart right ventricle ENCFF027ORH 286 bp overlap
ChIP heart right ventricle ENCFF063GTP 441 bp overlap
ChIP heart right ventricle ENCFF435TKW 262 bp overlap
ChIP heart right ventricle ENCFF577TID 391 bp overlap
ChIP heart right ventricle ENCFF741WMU 365 bp overlap
ChIP heart right ventricle ENCFF755UXZ 401 bp overlap
ChIP heart right ventricle ENCFF767XJQ 457 bp overlap
ChIP heart right ventricle ENCFF979TCT 501 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 478 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 404 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 271 bp overlap
ChIP hepatocyte ENCFF263BLJ 345 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 312 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 136 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 142 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 181 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 180 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 178 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 187 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 151 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 217 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 254 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 163 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 227 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 297 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 317 bp overlap
ChIP liver ENCFF895ERR 251 bp overlap
ChIP liver ENCSR254YRM.CTCF.liver 242 bp overlap
ChIP lower leg skin ENCFF055ALO 365 bp overlap
ChIP lower lobe of left lung ENCFF150FXW 457 bp overlap
ChIP lower lobe of right lung ENCFF092XHT 457 bp overlap
ChIP lung ENCSR463XCZ.CTCF.lung 239 bp overlap
ChIP lung_left_upper-lobe ENCSR027FSZ.CTCF.lung_left_upper-lobe 264 bp overlap
ChIP lung_left_upper-lobe ENCSR799TJD.CTCF.lung_left_upper-lobe 271 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 265 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 233 bp overlap
ChIP myotube ENCFF981UHL 371 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 373 bp overlap
ChIP nephron ENCFF411ACD 491 bp overlap
ChIP nephron ENCFF589HXU 521 bp overlap
ChIP nephron ENCFF972IQB 465 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 505 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 451 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 435 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 419 bp overlap
ChIP neural crest cell ENCFF182LWK 213 bp overlap
ChIP neural progenitor cell ENCFF420RBO 252 bp overlap
ChIP neural progenitor cell ENCFF581WPG 564 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 420 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 142 bp overlap
ChIP osteoblast ENCFF491ZJZ 425 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 427 bp overlap
ChIP osteocyte ENCFF929FPD 224 bp overlap
ChIP osteocyte ENCFF929FPD 317 bp overlap
ChIP ovary ENCFF062XMG 431 bp overlap
ChIP ovary ENCSR493APD.CTCF.ovary 220 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 102 bp overlap
ChIP placenta ENCFF029PHY 461 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 285 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 110 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 290 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 186 bp overlap
ChIP psoas muscle ENCFF305ZVF 405 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 327 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 419 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
ChIP right atrium auricular region ENCFF471FFM 465 bp overlap
ChIP right atrium auricular region ENCFF690LBT 297 bp overlap
ChIP right atrium auricular region ENCFF696NTN 308 bp overlap
ChIP right lobe of liver ENCFF250KSY 421 bp overlap
ChIP right lobe of liver ENCFF523SCB 431 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 291 bp overlap
ChIP skin ENCSR485VQV.CTCF.skin 260 bp overlap
ChIP smooth muscle cell ENCFF656FBT 357 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 416 bp overlap
ChIP spleen ENCFF065CBS 537 bp overlap
ChIP spleen ENCFF065CBS 333 bp overlap
ChIP spleen ENCFF326DUY 525 bp overlap
ChIP spleen ENCFF520HPZ 463 bp overlap
ChIP spleen ENCFF653ONC 444 bp overlap
ChIP spleen ENCFF878IYR 451 bp overlap
ChIP spleen ENCFF954DQD 480 bp overlap
ChIP spleen ENCSR482PMN.CTCF.spleen 269 bp overlap
ChIP spleen ENCSR028YEV.CTCF.spleen 220 bp overlap
ChIP stomach ENCSR361KVZ.CTCF.stomach 229 bp overlap
ChIP suprapubic skin ENCFF266CTJ 445 bp overlap
ChIP thoracic aorta ENCFF012WJQ 268 bp overlap
ChIP thoracic aorta ENCFF166PKA 461 bp overlap
ChIP thoracic-aorta ENCSR549TXG.CTCF.thoracic-aorta 356 bp overlap
ChIP thyroid gland ENCFF300RYK 445 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 388 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 237 bp overlap
ChIP tibial artery ENCFF279CMY 421 bp overlap
ChIP tibial artery ENCFF882IXS 397 bp overlap
ChIP tibial nerve ENCFF420SAZ 431 bp overlap
ChIP tibial nerve ENCFF477JAK 471 bp overlap
ChIP tibial nerve ENCFF665IWH 169 bp overlap
ChIP tibial nerve ENCFF857SLT 471 bp overlap
ChIP tibial-artery ENCSR079YAP.CTCF.tibial-artery 251 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 242 bp overlap
ChIP tibial-nerve ENCSR793YAD.CTCF.tibial-nerve 239 bp overlap
ChIP transverse colon ENCFF749DPF 481 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 335 bp overlap
ChIP upper lobe of left lung ENCFF654BFF 471 bp overlap
ChIP upper lobe of left lung ENCFF962AIJ 425 bp overlap
ChIP uterus ENCFF466ZUR 325 bp overlap
ChIP uterus ENCFF837OEY 371 bp overlap
ChIP uterus ENCSR684PGO.CTCF.uterus 201 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 240 bp overlap
ChIP vagina ENCSR606TNN.CTCF.vagina 335 bp overlap
CTCFL 2 datasets
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 165 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 110 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 125 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 190 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 4 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 165 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 240 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELK4 2 datasets
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 535 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 281 bp overlap
ETS1 3 datasets
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 182 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 164 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 216 bp overlap
ETV1 4 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 216 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 147 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 481 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 245 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 258 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 133 bp overlap
ChIP SEM GSE117864.FLI1.SEM 162 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 307 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 519 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 309 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 346 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 301 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 155 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 192 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 115 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MAZ 3 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 130 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 321 bp overlap
ChIP RH4 GSE83726.MED1.RH4 66 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 260 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 218 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 331 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 306 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 278 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 235 bp overlap
PAX8 1 dataset
ChIP OVSAHO GSE79893.PAX8.OVSAHO 67 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 373 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 23 datasets
ChIP H1 ENCFF698EWO 142 bp overlap
ChIP H1 ENCFF967OJF 69 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 364 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 386 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 395 bp overlap
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 150 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 411 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 120 bp overlap
ChIP IMR-90 ENCFF752PTH 237 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 368 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 536 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 264 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 352 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 258 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 242 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 240 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 245 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 251 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 203 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 128 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 172 bp overlap
ChIP liver ENCFF522JHE 226 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 318 bp overlap
RELA 1 dataset
ChIP KB_IL GSE52469.RELA.KB_IL 96 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE29180.RUNX1.Jurkat 133 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 334 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 87 bp overlap
SMARCA4 5 datasets
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 265 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 269 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 214 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 432 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 226 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 192 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 404 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 528 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 208 bp overlap
SMC1 5 datasets
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 514 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 378 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 130 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 295 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 196 bp overlap
SMC1A 2 datasets
ChIP A-549 GSE76893.SMC1A.A-549 200 bp overlap
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 223 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 163 bp overlap
SMC3 12 datasets
ChIP HeLa GSE126990.SMC3.HeLa 201 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 201 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 201 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 207 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 255 bp overlap
ChIP HeLa_ESCO2-deltaPBMA_ctrl_siRNA GSE105004.SMC3.HeLa_ESCO2-deltaPBMA_ctrl_siRNA 318 bp overlap
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 146 bp overlap
ChIP HepG2 ENCFF745UAV 271 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 139 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 216 bp overlap
ChIP SK-N-SH ENCFF791WFB 241 bp overlap
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 162 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 176 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 275 bp overlap
YY1 3 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 156 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 257 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 244 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
ChIP HEK293 GSE76494.ZNF320.HEK293 157 bp overlap
ZNF460 4 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 182 bp overlap
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