chr2 : 29,202,740 – 29,203,329
589 bp 61 TFs 1 linked gene
This 589 bp open chromatin element is linked to CLIP4 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CLIP4 87.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:29,197,740 – 29,208,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 224 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 367 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 465 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 258 bp overlap
CEBPA 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 131 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 476 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 261 bp overlap
FIGLA 3 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 176 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 256 bp overlap
FOXA1 2 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 190 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 240 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 589 bp overlap
ChIP DE DE-FOXA2-2 589 bp overlap
GATA2 7 datasets
ChIP ESF GSE108408.GATA2.ESF 197 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 390 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 255 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 130 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 236 bp overlap
GATA3 3 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 547 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 190 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 440 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 559 bp overlap
ChIP DE DE-GATA4-2 589 bp overlap
ChIP foregut GSE117136.GATA4.foregut 386 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 589 bp overlap
ChIP DE DE-GATA6-2 589 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 519 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 580 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 578 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 589 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 589 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 578 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 544 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 319 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 589 bp overlap
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
IRF9 1 dataset
Motif DE_48h DE_48h-IRF9_MA0653.1 15 bp overlap
ISL2 2 datasets
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 505 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 177 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 367 bp overlap
KLF5 1 dataset
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 308 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 491 bp overlap
ChIP SK-N-SH ENCFF746HVJ 344 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 421 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
PATZ1 2 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 589 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 589 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 467 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 283 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 438 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 459 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 150 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 311 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 402 bp overlap
REST 2 datasets
ChIP WA01 ENCSR000BHM.REST.WA01 103 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 148 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 488 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 456 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 298 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 249 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 504 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 589 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 179 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 275 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 492 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 512 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 64 bp overlap
SREBF1 2 datasets
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Stat2 1 dataset
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 391 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 188 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 262 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 262 bp overlap
TFAP2A 2 datasets
Motif DE_48h DE_48h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
ChIP SK-N-SH ENCFF869XXQ 205 bp overlap
TFAP2C 2 datasets
Motif DE_48h DE_48h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
TFAP4 2 datasets
Motif DE_36h DE_36h-TFAP4_MA1570.1 10 bp overlap
Motif DE_48h DE_48h-TFAP4_MA1570.1 10 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 418 bp overlap
ZEB1 3 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZIM3 1 dataset
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 94 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 173 bp overlap
ZNF257 2 datasets
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF274 3 datasets
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF317 1 dataset
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ZNF331 2 datasets
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap
ZNF354C 1 dataset
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 136 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 50 bp overlap
ZNF8 2 datasets
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
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