chrX : 104,257,403 – 104,257,899
496 bp 74 TFs 1 linked gene
This 496 bp open chromatin element is linked to ESX1 and is bound by 74 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ESX1 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:104,252,403 – 104,262,899
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 464 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 496 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 432 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 480 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 496 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 176 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 132 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 269 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 200 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
EZH2 3 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 144 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 262 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 86 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 154 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 308 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
JARID2 5 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 475 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 496 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 355 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 261 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 311 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 231 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 278 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 325 bp overlap
JUNB 1 dataset
ChIP hESC ENCSR917MAH.JUNB.hESC 146 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 147 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 172 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 179 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 202 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 268 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 227 bp overlap
ChIP H1 ENCFF747ZPQ 238 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 408 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 386 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 214 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 495 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 268 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 395 bp overlap
ChIP hESC GSE20650.NANOG.hESC 152 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 496 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 387 bp overlap
ChIP H1 ENCFF833NJP 105 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU4F1 2 datasets
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP GM23338 ENCFF333SNB 273 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 428 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 291 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 188 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 231 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 496 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 339 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 274 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 286 bp overlap
PPARD 2 datasets
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 467 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 496 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 182 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RNF2 4 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 233 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 289 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 356 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 496 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 182 bp overlap
RXRB 2 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
RXRG 2 datasets
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 326 bp overlap
Rxra 2 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 469 bp overlap
SMAD2_3 1 dataset
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 351 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 170 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 270 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 241 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 449 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 189 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 300 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 319 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 316 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 284 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 178 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 134 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 173 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 120 bp overlap
SUZ12 5 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 235 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 218 bp overlap
ChIP NT2/D1 ENCFF574SXS 162 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 239 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 91 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 187 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 216 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 195 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 263 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 342 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 496 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 496 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
Motif ES_0h ES_0h-THRB_MA1574.2 13 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 303 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 134 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF652 2 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
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