chrX : 14,529,248 14,529,589
341 bp 78 TFs 1 linked gene
This 341 bp open chromatin element is linked to GLRA2 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GLRA2 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:14,524,248 – 14,534,589
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 227 bp overlap
AR 2 datasets
ChIP A-375 GSE116189.AR.A-375 203 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 157 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 271 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 301 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1470.2 19 bp overlap
BRD4 5 datasets
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 165 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 341 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 110 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 90 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 185 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 226 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 199 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 160 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 187 bp overlap
CTCF 8 datasets
ChIP CD14-positive monocyte ENCFF087XLR 115 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 69 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 167 bp overlap
ChIP astrocyte ENCFF558APA 133 bp overlap
ChIP brain ENCFF685VRG 118 bp overlap
ChIP chondrocyte ENCFF134ORZ 67 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 244 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 232 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 226 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 195 bp overlap
EHMT2 2 datasets
ChIP A-549 ENCSR321BJQ.EHMT2.A-549 152 bp overlap
ChIP K-562 ENCSR175EOM.EHMT2.K-562 270 bp overlap
EPAS1 1 dataset
Motif DE_12h DE_12h-EPAS1_MA2325.1 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 180 bp overlap
FOXL2 1 dataset
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 163 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 143 bp overlap
GABPA 1 dataset
ChIP MCF-7 GSE72082.GABPA.MCF-7 61 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 155 bp overlap
HES7 1 dataset
Motif DE_12h DE_12h-HES7_MA0822.1 12 bp overlap
HIF1A 2 datasets
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 214 bp overlap
Hoxa13 1 dataset
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 140 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF6 2 datasets
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 150 bp overlap
ChIP PDAC GSE64557.KLF6.PDAC 328 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 106 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 300 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 146 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 301 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 195 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 160 bp overlap
MXI1 1 dataset
ChIP WA01 ENCSR000EBR.MXI1.WA01 129 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NRF1 13 datasets
ChIP HCC1954 GSE67867.NRF1.HCC1954 139 bp overlap
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 213 bp overlap
ChIP Hep-G2 ENCSR853ADA.NRF1.Hep-G2 267 bp overlap
ChIP Hep-G2 GSE97661.NRF1.Hep-G2 234 bp overlap
ChIP HepG2 ENCFF694NVY 249 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 171 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 122 bp overlap
ChIP K-562_Ab_R157-1-3H1 GSE97661.NRF1.K-562_Ab_R157-1-3H1 94 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 114 bp overlap
ChIP K562 ENCFF130SGK 313 bp overlap
ChIP MCF-7_Ab_R157-1-3D4 GSE97661.NRF1.MCF-7_Ab_R157-1-3D4 276 bp overlap
ChIP MCF-7_Ab_R157-1-3H1 GSE97661.NRF1.MCF-7_Ab_R157-1-3H1 199 bp overlap
ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 313 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 315 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 207 bp overlap
RAD21 5 datasets
ChIP GP5D GSE51234.RAD21.GP5D 209 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 117 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 150 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 220 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
REST 74 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 341 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 338 bp overlap
ChIP A549 ENCFF148AIS 291 bp overlap
ChIP A549 ENCFF148AIS 291 bp overlap
ChIP CD4 GSE49570.REST.CD4 307 bp overlap
ChIP GM12878 ENCFF235NGC 239 bp overlap
ChIP GM12878 ENCFF943QPB 241 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 341 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 309 bp overlap
ChIP GM23338 ENCFF024TCL 220 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 309 bp overlap
ChIP GP5D GSE51234.REST.GP5D 341 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 341 bp overlap
ChIP H1 ENCFF203SWY 341 bp overlap
ChIP H1 ENCFF429RUE 238 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 289 bp overlap
ChIP HCT116 ENCFF929AYY 195 bp overlap
ChIP HEK293 ENCFF073DOT 341 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 341 bp overlap
ChIP HL-60 ENCFF589LOF 264 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 341 bp overlap
ChIP HeLa-S3 ENCFF911DTC 212 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 313 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 341 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 332 bp overlap
ChIP HepG2 ENCFF122AWR 242 bp overlap
ChIP HepG2 ENCFF800JSL 220 bp overlap
ChIP Ishikawa ENCFF456OHV 282 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 341 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 341 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 341 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 318 bp overlap
ChIP K-562 GSE70482.REST.K-562 262 bp overlap
ChIP K562 ENCFF430APM 204 bp overlap
ChIP K562 ENCFF685YZN 330 bp overlap
ChIP K562 ENCFF688UKW 302 bp overlap
ChIP K562 ENCFF758CZL 341 bp overlap
ChIP K562 ENCFF758CZL 341 bp overlap
ChIP MCF-7 ENCFF893RRD 276 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 341 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 239 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 240 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 312 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 285 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 285 bp overlap
ChIP PFSK-1 ENCFF668WMP 251 bp overlap
ChIP PFSK-1 ENCFF845VHA 284 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 341 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 341 bp overlap
ChIP Panc1 ENCFF338WSQ 89 bp overlap
ChIP Panc1 ENCFF518EEQ 165 bp overlap
ChIP Panc1 ENCFF629OJO 242 bp overlap
ChIP SK-N-SH ENCFF635KBN 251 bp overlap
ChIP SK-N-SH ENCFF861MKH 137 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 238 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 341 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 341 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 341 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 341 bp overlap
ChIP hepatocyte ERP000395.REST.hepatocyte 125 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 293 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 234 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 251 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 243 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 282 bp overlap
ChIP liver ENCFF240FWT 284 bp overlap
ChIP liver ENCFF577AZT 313 bp overlap
ChIP liver ENCFF577AZT 313 bp overlap
ChIP liver ENCSR893QWP.REST.liver 341 bp overlap
ChIP liver ENCSR867WPH.REST.liver 341 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 290 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 239 bp overlap
ChIP neural ENCSR000BTV.REST.neural 313 bp overlap
ChIP neural cell ENCFF882LXX 147 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 194 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 297 bp overlap
SIN3A 9 datasets
ChIP H1 ENCFF042ZSL 341 bp overlap
ChIP H1 ENCFF896IJG 258 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 195 bp overlap
ChIP PFSK-1 ENCFF218MAY 241 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 150 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 146 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 204 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 186 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 243 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 128 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 223 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 210 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 275 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 170 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 273 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 138 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 173 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 75 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 301 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 141 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TBP 1 dataset
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD4 3 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 207 bp overlap
ChIP A549 ENCFF243FTL 147 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 143 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 226 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZFP37 1 dataset
ChIP Hep-G2 ENCSR505LJT.ZFP37.Hep-G2 148 bp overlap
ZNF143 2 datasets
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 148 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 211 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 155 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap