chr20 : 59,300,629 – 59,301,056
427 bp 77 TFs 1 linked gene
This 427 bp open chromatin element is linked to EDN3 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EDN3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:59,295,629 – 59,306,056
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AR 6 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 419 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 222 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 309 bp overlap
ChIP LNCaP_Bag-1L_KO_Veh GSE89938.AR.LNCaP_Bag-1L_KO_Veh 199 bp overlap
ChIP VCaP GSE83650.AR.VCaP 189 bp overlap
ChIP VCaP GSE98809.AR.VCaP 189 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 427 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 425 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 427 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 418 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 398 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 56 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 131 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 379 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 265 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 427 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 376 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 332 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 182 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 229 bp overlap
CTCF 6 datasets
ChIP Peyer's patch ENCFF701KWW 307 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 305 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 403 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 148 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 392 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 241 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 307 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 261 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 423 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 300 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 292 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 321 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 427 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 249 bp overlap
ESR1 14 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 390 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 396 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 270 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 382 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 427 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 229 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 302 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 105 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 306 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 427 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 427 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 427 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 427 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 332 bp overlap
EZH2 26 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 427 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 427 bp overlap
ChIP H1 ENCFF232NZA 427 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 427 bp overlap
ChIP PC-3 ENCFF855OUB 421 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 241 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 111 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 237 bp overlap
ChIP T98G GSE112240.EZH2.T98G 427 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 427 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 427 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 427 bp overlap
ChIP hESC GSE113817.EZH2.hESC 427 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 427 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 406 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 260 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 300 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 230 bp overlap
ChIP neural cell ENCFF610EPB 157 bp overlap
ChIP neural cell ENCFF610EPB 356 bp overlap
ChIP neural progenitor cell ENCFF018MKA 427 bp overlap
ChIP neural progenitor cell ENCFF472NFV 427 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 407 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 186 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 198 bp overlap
EZH2_phosphoT487 4 datasets
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 121 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 304 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 298 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 50 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 427 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 388 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 305 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 303 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 324 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 355 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 427 bp overlap
ChIP VCaP_ETOH GSE28950.HDAC2.VCaP_ETOH 306 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 268 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 334 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 427 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 211 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 423 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 243 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 427 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 427 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 427 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 292 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 371 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 427 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 427 bp overlap
KDM1A 4 datasets
ChIP H1 ENCFF696SGD 388 bp overlap
ChIP H1 ENCFF696SGD 343 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 309 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 260 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 348 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 427 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 194 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 427 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 327 bp overlap
KDM5B 2 datasets
ChIP MCF-7 GSE46055.KDM5B.MCF-7 121 bp overlap
ChIP MCF-7 GSE46055.KDM5B.MCF-7 237 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 326 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 270 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 427 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 298 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 194 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 344 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 427 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 427 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 410 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 427 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 427 bp overlap
POLR2A 2 datasets
ChIP Peyer's patch ENCFF990IYL 351 bp overlap
ChIP thyroid gland ENCFF979LRR 412 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 197 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 342 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 427 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 427 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 427 bp overlap
RBBP4 2 datasets
ChIP SCMC GSE155861.RBBP4.SCMC 145 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 160 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 295 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 381 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 375 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 427 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 427 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 264 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 427 bp overlap
SIN3A 2 datasets
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 251 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 87 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 313 bp overlap
SMARCA4 2 datasets
ChIP MCF-7_shJUN GSE128445.SMARCA4.MCF-7_shJUN 166 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 264 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 143 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 175 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 176 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 427 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 427 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 182 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 358 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 427 bp overlap
SUZ12 8 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 427 bp overlap
ChIP H1 ENCFF881NFR 427 bp overlap
ChIP H1 ENCFF881NFR 427 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 427 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 427 bp overlap
ChIP NT2/D1 ENCFF574SXS 389 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 142 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 427 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 132 bp overlap
TARDBP 1 dataset
ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 166 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 390 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 66 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 171 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 427 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 217 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 427 bp overlap
YAP1 1 dataset
ChIP H69 GSE62274.YAP1.H69 171 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 135 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 404 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 376 bp overlap
ZBTB7A 2 datasets
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 279 bp overlap
ChIP VCaP_DHT GSE123089.ZBTB7A.VCaP_DHT 73 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 261 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 167 bp overlap
ZNF263 1 dataset
ChIP WTC11 ENCFF893RTM 319 bp overlap
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