chr18 : 48,802,644 48,803,302
658 bp 62 TFs 2 linked genes
This 658 bp open chromatin element is linked to SMAD7 and CTIF and is bound by 62 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SMAD7 145.5 kb Distal Multiome
CTIF 264.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:48,797,644 – 48,808,302
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 213 bp overlap
BCL6 3 datasets
ChIP CD4 GSE59933.BCL6.CD4 130 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 158 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 71 bp overlap
BRD4 4 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 85 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 398 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 339 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 415 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CRX 1 dataset
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 271 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 228 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 298 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 282 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 283 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 188 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 172 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 399 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCFF432UGA 72 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 314 bp overlap
ESR1 10 datasets
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 219 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 345 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 226 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 499 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 425 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 614 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 383 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 590 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 524 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 123 bp overlap
ESR2 4 datasets
Motif DE_24h DE_24h-ESR2_MA0258.2 15 bp overlap
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 300 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 125 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 185 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 181 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 338 bp overlap
ChIP DE DE-GATA6-2 411 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 280 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 326 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 397 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 372 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 355 bp overlap
IKZF1 6 datasets
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 381 bp overlap
ChIP K562 ENCFF348IBL 501 bp overlap
ISL2 1 dataset
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 420 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 484 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 451 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 522 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 468 bp overlap
MED1 1 dataset
ChIP CD4_Th1_DMSO GSE62482.MED1.CD4_Th1_DMSO 60 bp overlap
MEF2D 1 dataset
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 266 bp overlap
MGA 2 datasets
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 233 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 305 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 133 bp overlap
Mafg 4 datasets
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 68 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 328 bp overlap
POLR2A 3 datasets
ChIP GM12892 ENCFF542ZFO 88 bp overlap
ChIP GM12892 ENCFF542ZFO 294 bp overlap
ChIP thyroid gland ENCFF979LRR 282 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 347 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 521 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 282 bp overlap
REST 3 datasets
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 120 bp overlap
ChIP neural ENCSR000BTV.REST.neural 457 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 413 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 233 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 658 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 574 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 638 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 539 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 474 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 637 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 651 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 559 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 277 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 230 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 304 bp overlap
ChIP neural cell ENCFF795YGY 531 bp overlap
ChIP neural cell ENCFF795YGY 332 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 331 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 437 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 224 bp overlap
TBX1 2 datasets
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX20 2 datasets
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX4 2 datasets
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 96 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 387 bp overlap
ZBTB33 2 datasets
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 501 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 312 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 227 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF317 2 datasets
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 144 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 159 bp overlap
Zic1::Zic2 4 datasets
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 4 datasets
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap