chr1 : 247,292,602 247,293,444
842 bp 68 TFs 0 linked genes
This 842 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:247,287,602 – 247,298,444
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 372 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 161 bp overlap
BHLHE22 2 datasets
ChIP CAL-1 GSE43876.BHLHE22.CAL-1 252 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 328 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 242 bp overlap
BRD4 2 datasets
ChIP THP-1_iBET GSE138084.BRD4.THP-1_iBET 227 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 284 bp overlap
CEBPA 2 datasets
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 94 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 119 bp overlap
CTCF 9 datasets
ChIP AG04450 ENCFF116DJL 297 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA1930.2 33 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 187 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 260 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 197 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 277 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 226 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 155 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 131 bp overlap
DMRTA2 1 dataset
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 403 bp overlap
ChIP DE DE-GATA4-2 386 bp overlap
ChIP foregut GSE117136.GATA4.foregut 302 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 289 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 370 bp overlap
ChIP DE DE-GATA6-2 356 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 531 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 523 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 535 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 628 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 459 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 471 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 308 bp overlap
ChIP foregut GSE117136.GATA6.foregut 294 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 416 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 381 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 158 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 369 bp overlap
ChIP K562 ENCFF348IBL 505 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 166 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 369 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 196 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 184 bp overlap
MYF5 1 dataset
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 358 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 314 bp overlap
Neurod2 2 datasets
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nkx3-1 1 dataset
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 261 bp overlap
PRDM10 1 dataset
ChIP K562 ENCFF740YLK 76 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RAD21 6 datasets
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 178 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 184 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 340 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 278 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 228 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 412 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 249 bp overlap
REL 1 dataset
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
RELA 3 datasets
ChIP AC16_TNFA GSE51169.RELA.AC16_TNFA 268 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 197 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 66 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 111 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 356 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 504 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 406 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 286 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 359 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 169 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 200 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 231 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 191 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 339 bp overlap
SPI1 7 datasets
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 178 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 166 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 155 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 209 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 148 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 126 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 210 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 206 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 320 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 199 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 142 bp overlap
TEAD1 2 datasets
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 176 bp overlap
TEAD4 3 datasets
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 238 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 459 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Wt1 1 dataset
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 185 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF708 1 dataset
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Zfp335 2 datasets
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zfx 1 dataset
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap
Zic2 2 datasets
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap