chr17 : 28,621,936 28,622,562
626 bp 55 TFs 23 linked genes
This 626 bp open chromatin element is linked to 23 target genes and is bound by 55 transcription factors.
Linked Genes
23 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
RSKR 7.7 kb Proximal Proximity
ENSG00000258472 7.8 kb Proximal Proximity
BLTP2 22.8 kb Distal Multiome
SPAG5 23.3 kb Distal Multiome
SDF2 39.6 kb Distal Multiome
SUPT6H 39.9 kb Distal Multiome
ALDOC 45.5 kb Distal Multiome
PIGS 50.8 kb Distal Multiome
UNC119 69.7 kb Distal Multiome
PROCA1 89.4 kb Distal Multiome
RAB34 96.1 kb Distal Multiome
RPL23A 97.9 kb Distal Multiome
NEK8 103.5 kb Distal Multiome
TLCD1 105.6 kb Distal Multiome
TRAF4 121.7 kb Distal Multiome
FAM222B 220.4 kb Distal Multiome
ERAL1 232.7 kb Distal Multiome
TMEM199 264.7 kb Distal Multiome
POLDIP2 264.8 kb Distal Multiome
FLOT2 275.3 kb Distal Multiome
DHRS13 280.6 kb Distal Multiome
TNFAIP1 286.6 kb Distal Multiome
IFT20 286.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:28,616,936 – 28,627,562
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 297 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 325 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 299 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 626 bp overlap
Bcl11B 1 dataset
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 312 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 279 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 377 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 333 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 274 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 274 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 472 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 265 bp overlap
ChIP DE DE-FOXA2-1 528 bp overlap
ChIP DE DE-FOXA2-2 529 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 626 bp overlap
ChIP DE DE-GATA4-2 626 bp overlap
ChIP foregut GSE117136.GATA4.foregut 371 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 626 bp overlap
ChIP DE DE-GATA6-2 626 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 626 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 599 bp overlap
ChIP foregut GSE117136.GATA6.foregut 272 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
HOXB4 1 dataset
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 515 bp overlap
Lhx1 1 dataset
Motif DE_72h DE_72h-Lhx1_MA1518.3 10 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 255 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 223 bp overlap
MEN1 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 499 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 288 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 336 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 245 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 197 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 191 bp overlap
NKX2-4 1 dataset
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
Nkx2-1 1 dataset
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
Nr2e1 1 dataset
Motif DE_72h DE_72h-Nr2e1_MA0676.1 9 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 329 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU3F2 1 dataset
Motif DE_72h DE_72h-POU3F2_MA0787.1 12 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 129 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 124 bp overlap
POU6F1 1 dataset
Motif DE_72h DE_72h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_72h DE_72h-POU6F2_MA0793.2 9 bp overlap
PROX1 1 dataset
Motif DE_72h DE_72h-PROX1_MA0794.1 12 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1618.2 9 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 314 bp overlap
RUNX3 1 dataset
Motif DE_72h DE_72h-RUNX3_MA0684.3 8 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 553 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 562 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 401 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 467 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 496 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 344 bp overlap
TFAP4 2 datasets
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
Motif DE_72h DE_72h-TFAP4_MA1570.1 10 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 402 bp overlap
ZNF274 1 dataset
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF652 1 dataset
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ZNF8 1 dataset
Motif DE_72h DE_72h-ZNF8_MA1718.1 20 bp overlap