chr16 : 51,526,672 – 51,527,309
637 bp 68 TFs 1 linked gene
This 637 bp open chromatin element is linked to HNRNPA1L3 and is bound by 68 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HNRNPA1L3 118.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:51,521,672 – 51,532,309
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ATF3 2 datasets
ChIP liver ENCFF375GID 344 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 298 bp overlap
BRD4 3 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 77 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 185 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 172 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 246 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
Dmrt1 1 dataset
Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 182 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 248 bp overlap
ETV2::DRGX 3 datasets
Motif DE_48h DE_48h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_60h DE_60h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_72h DE_72h-ETV2DRGX_MA1940.2 12 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 229 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 222 bp overlap
FOXA1 5 datasets
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 213 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 204 bp overlap
ChIP liver ERP002306.FOXA1.liver 301 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 133 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 347 bp overlap
FOXA2 7 datasets
ChIP DE DE-FOXA2-1 637 bp overlap
ChIP DE DE-FOXA2-2 491 bp overlap
ChIP liver ENCFF877SFI 345 bp overlap
ChIP liver ENCFF888VJF 201 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 198 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 294 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 387 bp overlap
GATA1::TAL1 2 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 277 bp overlap
ChIP SH-SY5Y ENCFF485YIB 309 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 227 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 208 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 201 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 489 bp overlap
ChIP DE DE-GATA4-2 513 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 283 bp overlap
ChIP foregut GSE117136.GATA4.foregut 481 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 408 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 521 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 578 bp overlap
ChIP DE DE-GATA6-2 490 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 236 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 280 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 440 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 327 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 335 bp overlap
ChIP foregut GSE117136.GATA6.foregut 340 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 342 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 344 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 219 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 154 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 530 bp overlap
HNF4A 4 datasets
ChIP liver ENCFF354NRH 214 bp overlap
ChIP liver ENCFF449HPV 114 bp overlap
ChIP liver ENCFF449HPV 441 bp overlap
ChIP liver ERP002306.HNF4A.liver 286 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 216 bp overlap
JUND 2 datasets
ChIP liver ENCFF007WWT 378 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 284 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 384 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 402 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 208 bp overlap
MAX 4 datasets
ChIP liver ENCFF092GVW 394 bp overlap
ChIP liver ENCFF584QGB 407 bp overlap
ChIP liver ENCSR521IID.MAX.liver 319 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 159 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 400 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 233 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
Nr1h3::Rxra 3 datasets
Motif DE_48h DE_48h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap
ONECUT1 1 dataset
ChIP liver ERP002306.ONECUT1.liver 154 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 444 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 318 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 393 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 433 bp overlap
ChIP liver ENCFF522JHE 401 bp overlap
REST 2 datasets
ChIP liver ENCFF240FWT 402 bp overlap
ChIP liver ENCSR867WPH.REST.liver 303 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 188 bp overlap
ChIP liver ENCFF807CIA 349 bp overlap
Rhox11 2 datasets
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SIX2 5 datasets
Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap
Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 637 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 584 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 637 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 370 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 396 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 194 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 465 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 604 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 427 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 637 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 335 bp overlap
ChIP liver ENCFF769YSM 479 bp overlap
SP5 2 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SRY 1 dataset
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Spz1 1 dataset
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
TAF1 1 dataset
ChIP liver ENCSR016BMM.TAF1.liver 245 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 269 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 246 bp overlap
YY1 5 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 408 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 352 bp overlap
ChIP liver ENCFF400MBC 525 bp overlap
ChIP liver ENCFF515BWJ 540 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 420 bp overlap
ZBTB33 1 dataset
ChIP liver ENCSR516HUP.ZBTB33.liver 300 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 363 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 90 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 146 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 371 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 335 bp overlap
ZNF44 1 dataset
ChIP HEK293T GSE78099.ZNF44.HEK293T 216 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 130 bp overlap
ZNF524 2 datasets
Motif DE_48h DE_48h-ZNF524_MA2096.1 9 bp overlap
Motif DE_72h DE_72h-ZNF524_MA2096.1 9 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 275 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 190 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 621 bp overlap
ZNF664 3 datasets
ChIP HEK293 ENCFF343XSW 55 bp overlap
ChIP HEK293 ENCFF343XSW 258 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 154 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 194 bp overlap
ZSCAN4 2 datasets
Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 391 bp overlap
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