chr15 : 57,495,641 57,496,411
770 bp 71 TFs 3 linked genes
This 770 bp open chromatin element is linked to CGNL1, POLR2M, and TCF12 and is bound by 71 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
CGNL1 119.6 kb Distal Multiome
POLR2M 210.6 kb Distal Multiome
TCF12 577.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:57,490,641 – 57,501,411
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 518 bp overlap
ARNT2 2 datasets
ChIP HepG2 ENCFF940DGN 358 bp overlap
ChIP HepG2 ENCFF940DGN 82 bp overlap
BRD4 1 dataset
ChIP HT29 GSE73319.BRD4.HT29 123 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 198 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 239 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 170 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 248 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 574 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 162 bp overlap
ERF::FOXO1 2 datasets
Motif DE_48h DE_48h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 17 datasets
ChIP HAEC GSE89970.ERG.HAEC 155 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 215 bp overlap
ChIP aortic-endothelial-cell_D14 GSE139377.ERG.aortic-endothelial-cell_D14 190 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 174 bp overlap
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 179 bp overlap
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 166 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 228 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 160 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 198 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 198 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 187 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 258 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 237 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 301 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 184 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 282 bp overlap
ChIP aortic-endothelial-cell_D53 GSE139377.ERG.aortic-endothelial-cell_D53 183 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 385 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 255 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 380 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 197 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 163 bp overlap
ChIP DE DE-FOXA2-1 739 bp overlap
ChIP DE DE-FOXA2-2 651 bp overlap
FOXH1 1 dataset
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 225 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 221 bp overlap
GATA2 4 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP HepG2 ENCFF905PYM 371 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 280 bp overlap
GATA4 15 datasets
ChIP A-549 GSE85002.GATA4.A-549 275 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 435 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 227 bp overlap
ChIP DE DE-GATA4-1 726 bp overlap
ChIP DE DE-GATA4-2 770 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 239 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 239 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 339 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 223 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 224 bp overlap
ChIP foregut GSE117136.GATA4.foregut 624 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 630 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 534 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 21 datasets
ChIP AGS GSE51705.GATA6.AGS 318 bp overlap
ChIP AGS GSE51936.GATA6.AGS 112 bp overlap
ChIP Caco-2_DIFF GSE23436.GATA6.Caco-2_DIFF 96 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 252 bp overlap
ChIP DE DE-GATA6-1 668 bp overlap
ChIP DE DE-GATA6-2 721 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 691 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 689 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 625 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 722 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 729 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 692 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 297 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 673 bp overlap
ChIP foregut GSE117136.GATA6.foregut 663 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 552 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 609 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 562 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 519 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 175 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 159 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 84 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 436 bp overlap
ChIP K562 ENCFF348IBL 271 bp overlap
ChIP K562 ENCFF771OHZ 127 bp overlap
JUN 2 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 212 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 225 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 400 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 211 bp overlap
MLX 1 dataset
ChIP Hep-G2 ENCSR125DAD.MLX.Hep-G2 120 bp overlap
MYC 1 dataset
ChIP PAVE GSE47152.MYC.PAVE 146 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 201 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NR2F2 4 datasets
ChIP liver ENCFF427MRU 421 bp overlap
ChIP liver ENCFF565JGD 491 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 387 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 305 bp overlap
PBX3 2 datasets
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 177 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 213 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 209 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 424 bp overlap
PKNOX1 2 datasets
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 242 bp overlap
ChIP HepG2 ENCFF508UTS 237 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 194 bp overlap
PRDM15 1 dataset
ChIP HepG2 ENCFF259LUZ 485 bp overlap
RARG 1 dataset
ChIP HepG2 ENCFF989AQH 50 bp overlap
RELA 13 datasets
ChIP HAEC GSE89970.RELA.HAEC 183 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 153 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 198 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 177 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 221 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 193 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 207 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 169 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 197 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 283 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 253 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 276 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 451 bp overlap
RXRA::VDR 2 datasets
Motif DE_48h DE_48h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap
RXRG 2 datasets
Motif DE_48h DE_48h-RXRG_MA1556.1 14 bp overlap
Motif DE_60h DE_60h-RXRG_MA1556.1 14 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 259 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 770 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 731 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 708 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 682 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 731 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 497 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 770 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 770 bp overlap
SMAD3 2 datasets
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 119 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 176 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 206 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 353 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 770 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 114 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 166 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Vdr 2 datasets
Motif DE_48h DE_48h-Vdr_MA0693.4 7 bp overlap
Motif DE_60h DE_60h-Vdr_MA0693.4 7 bp overlap
ZBTB34 1 dataset
ChIP HepG2 ENCFF161MIO 517 bp overlap
ZFP14 3 datasets
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
ChIP HepG2 ENCFF136CIU 385 bp overlap
ZMYM2 1 dataset
ChIP HepG2 ENCFF575OMW 327 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 173 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 368 bp overlap
ZNF24 2 datasets
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
ZNF281 2 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF354A 2 datasets
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 56 bp overlap
ZNF558 2 datasets
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 290 bp overlap
ZNF879 1 dataset
ChIP HepG2 ENCFF479BKR 208 bp overlap