chr1 : 230,576,014 230,576,719
705 bp 84 TFs 2 linked genes
This 705 bp open chromatin element is linked to COG2 and C1orf198 and is bound by 84 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
COG2 66.2 kb Distal Multiome
C1orf198 292.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:230,571,014 – 230,581,719
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 10 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 337 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 183 bp overlap
ChIP LNCaP_Bag-1L_WT GSE89938.AR.LNCaP_Bag-1L_WT 179 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 197 bp overlap
ChIP VCaP GSE148358.AR.VCaP 216 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 156 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 211 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 165 bp overlap
ChIP VCaP_Veh GSE125245.AR.VCaP_Veh 217 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 307 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 242 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 321 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BCL11A 8 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 203 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 69 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 134 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 63 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 67 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 69 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 69 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 172 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 161 bp overlap
BRD4 1 dataset
ChIP Mutu-1_JQ1 GSE84213.BRD4.Mutu-1_JQ1 159 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 188 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 264 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 633 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 235 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 252 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 373 bp overlap
EN2 1 dataset
Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap
ERG 2 datasets
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 164 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 287 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 247 bp overlap
FOXA1 6 datasets
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 224 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 249 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 210 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 167 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 197 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 120 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 191 bp overlap
ChIP DE DE-FOXA2-1 705 bp overlap
ChIP DE DE-FOXA2-2 705 bp overlap
GATA1 13 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 308 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 399 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 348 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 237 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 214 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 198 bp overlap
ChIP erythroblast ENCFF125LDD 395 bp overlap
ChIP erythroblast ENCFF867JAR 540 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 661 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 402 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 286 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 422 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 290 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 196 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 196 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 202 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 473 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 326 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 351 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 232 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 705 bp overlap
ChIP DE DE-GATA4-2 705 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 242 bp overlap
ChIP foregut GSE117136.GATA4.foregut 383 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 487 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 454 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 268 bp overlap
ChIP DE DE-GATA6-1 705 bp overlap
ChIP DE DE-GATA6-2 705 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 447 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 539 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 565 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 568 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 215 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 214 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 362 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 504 bp overlap
ChIP foregut GSE117136.GATA6.foregut 358 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 496 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 293 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 375 bp overlap
GBX1 1 dataset
Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 174 bp overlap
ChIP K562 ENCFF055GAZ 188 bp overlap
HNF1A 1 dataset
ChIP NY15 GSE108150.HNF1A.NY15 167 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB13 2 datasets
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 229 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 281 bp overlap
HOXC12 1 dataset
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 267 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 379 bp overlap
LBX1 1 dataset
Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 220 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap
MAFF 1 dataset
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
MED1 1 dataset
ChIP VCaP_Veh GSE125245.MED1.VCaP_Veh 243 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 193 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 225 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 345 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 205 bp overlap
Nkx3-2 1 dataset
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PHOX2B 1 dataset
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 4 datasets
ChIP erythroblast ENCFF498VMR 705 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 208 bp overlap
ChIP transverse colon ENCFF610RWV 425 bp overlap
PRRX2 1 dataset
Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 413 bp overlap
RBPJ 1 dataset
ChIP MUTUL GSE75503.RBPJ.MUTUL 212 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 372 bp overlap
SMAD1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.SMAD1.CD34_ERYTH_BMP 186 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 609 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 393 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 450 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 224 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 186 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 626 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 705 bp overlap
SOX4 1 dataset
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 5 datasets
ChIP CD34 GSE52924.TAL1.CD34 259 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 229 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 142 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 295 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 232 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 374 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 209 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 348 bp overlap
ZNF449 1 dataset
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCFF468FCG 50 bp overlap