chr1 : 223,016,924 223,017,599
675 bp 69 TFs 0 linked genes
This 675 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:223,011,924 – 223,022,599
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 196 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 187 bp overlap
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ATF2 3 datasets
ChIP H1 ENCFF295GZO 166 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 435 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 180 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 311 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 157 bp overlap
BRD4 2 datasets
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 205 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 223 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 131 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 137 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 169 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 331 bp overlap
CTCF 77 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 481 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 112 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 313 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 181 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 205 bp overlap
ChIP GM23338 ENCFF772DML 91 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 275 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 103 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 196 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 275 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 275 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 204 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 266 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 127 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 273 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 264 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 118 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 222 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 256 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 150 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 139 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 103 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 192 bp overlap
ChIP KB_5Z GSE134435.CTCF.KB_5Z 145 bp overlap
ChIP KB_IL-1_5Z GSE134435.CTCF.KB_IL-1_5Z 166 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 202 bp overlap
ChIP Loucy ENCFF359TVQ 393 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 275 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 91 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 223 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 270 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 203 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 314 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 114 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 180 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 144 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 327 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 134 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 137 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 291 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 212 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 193 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 148 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 174 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 162 bp overlap
ChIP endodermal cell ENCFF471YCZ 172 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 261 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 134 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 128 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 150 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 144 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 229 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 158 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 515 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 190 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 110 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 142 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 147 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 164 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 141 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 239 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 199 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 231 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 176 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 123 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 247 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 192 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
CTCFL 3 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 114 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 229 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 148 bp overlap
EGR1 2 datasets
ChIP A-375 GSE116190.EGR1.A-375 274 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 195 bp overlap
EP300 1 dataset
ChIP upper lobe of left lung ENCFF024QBJ 200 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 203 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 515 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 212 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 217 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 212 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 175 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 194 bp overlap
FOXJ3 1 dataset
ChIP WTC11 ENCFF909BTK 135 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 297 bp overlap
GATA4 2 datasets
ChIP foregut GSE117136.GATA4.foregut 305 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 202 bp overlap
GATA6 2 datasets
ChIP foregut GSE117136.GATA6.foregut 246 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 278 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 226 bp overlap
HNRNPL 1 dataset
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 206 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 120 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 294 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 130 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 289 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 309 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 264 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 221 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 361 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 325 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 114 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 168 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 211 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 317 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 257 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 187 bp overlap
POLR2A 5 datasets
ChIP H1 ENCFF566JSR 210 bp overlap
ChIP H1 ENCFF566JSR 159 bp overlap
ChIP H1 ENCFF833NJP 160 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 214 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 196 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 222 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 211 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 292 bp overlap
RAD21 14 datasets
ChIP GP5D GSE51234.RAD21.GP5D 329 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 283 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 220 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 227 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 188 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 132 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 142 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 291 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 197 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 220 bp overlap
RBM39 3 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 365 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 357 bp overlap
ChIP HepG2 ENCFF084YZE 586 bp overlap
RELA 30 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 263 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 142 bp overlap
ChIP HUVEC-C_TNF GSE43070.RELA.HUVEC-C_TNF 216 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 176 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 240 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 220 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 240 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 224 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 240 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 234 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 223 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 243 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 196 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 80 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 208 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 175 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 190 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 141 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 176 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 166 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 102 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 139 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 130 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 282 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE36578.SMAD3.BG03 86 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 153 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 471 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 229 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 247 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 209 bp overlap
STAG1 6 datasets
ChIP HeLa GSE126990.STAG1.HeLa 187 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 187 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 279 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 262 bp overlap
ChIP HepG2 ENCFF843EBZ 277 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 232 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 219 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 306 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 159 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 151 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 292 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 419 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 571 bp overlap