chr13 : 106,469,021 106,469,562
541 bp 83 TFs 0 linked genes
This 541 bp open chromatin element has no linked target genes and is bound by 83 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:106,464,021 – 106,474,562
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 326 bp overlap
BRD4 1 dataset
ChIP COLO-205 GSE73319.BRD4.COLO-205 378 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 431 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 256 bp overlap
CTCF 2 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 233 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 259 bp overlap
CTCFL 1 dataset
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 312 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 331 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 240 bp overlap
EN2 1 dataset
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 243 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 437 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 174 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 126 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 408 bp overlap
ChIP DE DE-GATA4-2 521 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 541 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 318 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 429 bp overlap
ChIP DE DE-GATA6-2 498 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 541 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 541 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 541 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 541 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 541 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 541 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 496 bp overlap
ChIP foregut GSE117136.GATA6.foregut 541 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 541 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 330 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 541 bp overlap
GBX1 1 dataset
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 170 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 232 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Hnf1A 1 dataset
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 262 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 357 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 396 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 444 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 413 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 166 bp overlap
LBX1 1 dataset
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
Lef1 1 dataset
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
MAX 3 datasets
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 154 bp overlap
ChIP HCT116 ENCFF810LEN 361 bp overlap
ChIP WTC11 ENCFF223QFY 394 bp overlap
MEF2B 1 dataset
Motif DE_36h DE_36h-MEF2B_MA0660.1 12 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MYCN 1 dataset
ChIP Kelly_res GSE115249.MYCN.Kelly_res 166 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
PKNOX2 1 dataset
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 295 bp overlap
PRDM1 1 dataset
ChIP HEK293 GSE76494.PRDM1.HEK293 62 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
PRRX2 1 dataset
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 202 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 199 bp overlap
Rfx6 1 dataset
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
SATB1 1 dataset
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 335 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 501 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 402 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 389 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 345 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 443 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 116 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 183 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 425 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 415 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 223 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 372 bp overlap
TCF7 1 dataset
Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 169 bp overlap
TGIF1 1 dataset
Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 491 bp overlap
Thap11 1 dataset
Motif DE_36h DE_36h-Thap11_MA1573.2 14 bp overlap
ZNF148 1 dataset
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF281 2 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 166 bp overlap
ZNF682 1 dataset
Motif DE_36h DE_36h-ZNF682_MA1599.2 11 bp overlap
Zfx 1 dataset
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap