chr13 : 90,105,100 90,105,500
400 bp 80 TFs 0 linked genes
This 400 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:90,100,100 – 90,110,500
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 185 bp overlap
BRD2 3 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 400 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 361 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 272 bp overlap
BRD4 7 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 400 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 298 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 173 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 87 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 133 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 99 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 400 bp overlap
BRD9 1 dataset
ChIP Mel270_DMSO GSE124720.BRD9.Mel270_DMSO 69 bp overlap
CBX3 1 dataset
ChIP K-562 ENCSR000ATV.CBX3.K-562 92 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 82 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 87 bp overlap
CHD1 1 dataset
ChIP K562 ENCFF118VJV 210 bp overlap
CREBBP 5 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 263 bp overlap
ChIP PC-3 GSE147455.CREBBP.PC-3 141 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 197 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 400 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 400 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 57 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 61 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 59 bp overlap
ESR1 4 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 85 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 103 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 107 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 94 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 147 bp overlap
ChIP MV4-11 GSE64862.FOS.MV4-11 196 bp overlap
FOSL2 4 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 117 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 176 bp overlap
ChIP SK-N-SH ENCFF127ZDW 112 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 63 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 189 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 107 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 102 bp overlap
FOXA2 7 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 73 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 105 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 223 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 152 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 151 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 142 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 99 bp overlap
GRHL1 1 dataset
Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap
GRHL2 7 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
ChIP HBE GSE46194.GRHL2.HBE 220 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 232 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 235 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 231 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 77 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 212 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 228 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 190 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 175 bp overlap
IRF4 3 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 65 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 92 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 93 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 106 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 100 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 144 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 177 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 129 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 73 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCFF551NEQ 107 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 83 bp overlap
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 263 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 400 bp overlap
KLF4 2 datasets
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 112 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 217 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 274 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 67 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 308 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 175 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 51 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 265 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 76 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 2 datasets
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 110 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 86 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 141 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 208 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 148 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 164 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 170 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 196 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 184 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 156 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 68 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SIX5 1 dataset
ChIP K562 ENCFF472MWE 82 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 400 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 236 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 67 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 86 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 56 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 116 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 103 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 281 bp overlap
SMC1A 3 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 185 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 221 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 400 bp overlap
SOX2 3 datasets
ChIP HCC2814 GSE137459.SOX2.HCC2814 79 bp overlap
ChIP HCC95 GSE137459.SOX2.HCC95 118 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 189 bp overlap
SPI1 4 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 100 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 59 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 69 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 71 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 54 bp overlap
STAT3 6 datasets
ChIP HCC1937 GSE152203.STAT3.HCC1937 95 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 175 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 168 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 104 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 200 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 157 bp overlap
TEAD1 2 datasets
ChIP adipocyte GSE140782.TEAD1.adipocyte 110 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 108 bp overlap
TEAD4 5 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 190 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 80 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 400 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 181 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 130 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 97 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 211 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 369 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 120 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 400 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 345 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF384 1 dataset
ChIP GM12878 ENCFF229VSP 102 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 400 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap