chr13 : 28,438,646 28,439,159
513 bp 55 TFs 3 linked genes
This 513 bp open chromatin element is linked to FLT1, POMP, and PAN3 and is bound by 55 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
FLT1 56.2 kb Distal Multiome
POMP 220.2 kb Distal Multiome
PAN3 300.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:28,433,646 – 28,444,159
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 513 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 475 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 513 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 153 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 144 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 300 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 436 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 495 bp overlap
CBFB 1 dataset
ChIP WTC11 ENCFF113HIY 327 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 413 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 313 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 212 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 266 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 177 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 159 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 432 bp overlap
CTCF 7 datasets
ChIP GM23338 ENCFF772DML 164 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 203 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 227 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 423 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 175 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 163 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 171 bp overlap
CTNNB1 1 dataset
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 293 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 158 bp overlap
ChIP hESC GSE17917.EP300.hESC 275 bp overlap
ESR1 3 datasets
ChIP T-47D GSE148277.ESR1.T-47D 111 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 118 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 118 bp overlap
ESRRA 1 dataset
ChIP WTC11 ENCFF591YCA 356 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 383 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 277 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 133 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 513 bp overlap
ChIP H1 ENCFF353UJQ 377 bp overlap
ChIP H1 ENCFF939VKA 224 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 186 bp overlap
HSF1 1 dataset
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 466 bp overlap
JUN 6 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 463 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 513 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 444 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 513 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 360 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 460 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 513 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 267 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 257 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 363 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 513 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 513 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 164 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 513 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 513 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 491 bp overlap
ChIP hESC GSE18292.NANOG.hESC 266 bp overlap
ChIP hESC GSE20650.NANOG.hESC 206 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 211 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 169 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 309 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 183 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 287 bp overlap
ChIP GM23338 ENCFF333SNB 257 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 513 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 507 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 513 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 384 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 410 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 353 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 334 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 513 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 294 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 485 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 513 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 513 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 513 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 429 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 473 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 513 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 411 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 513 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 513 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 480 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 410 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 351 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 234 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 513 bp overlap
SMAD3 7 datasets
ChIP BG03 GSE21614.SMAD3.BG03 311 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 426 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 391 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 375 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 302 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 193 bp overlap
ChIP hESC_DIFF_D1 GSE75297.SMAD3.hESC_DIFF_D1 222 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 124 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 513 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 513 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 513 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 513 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 299 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 491 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 513 bp overlap
SOX2 4 datasets
ChIP RENVM GSE49404.SOX2.RENVM 142 bp overlap
ChIP hESC GSE69479.SOX2.hESC 229 bp overlap
ChIP hESC GSE18292.SOX2.hESC 108 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 409 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 219 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 163 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 332 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 513 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 319 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 235 bp overlap
TP53 4 datasets
ChIP H9 GSE39912.TP53.H9 80 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 421 bp overlap
ChIP WTC11 ENCFF359JCU 363 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 506 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 81 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 316 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 126 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 455 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 248 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 513 bp overlap