chr1 : 213,947,258 213,947,641
383 bp 74 TFs 0 linked genes
This 383 bp open chromatin element has no linked target genes and is bound by 74 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:213,942,258 – 213,952,641
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 347 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 351 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
BRD4 4 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 200 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 383 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 383 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 383 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 102 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 145 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 295 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 96 bp overlap
CREM 1 dataset
ChIP HepG2 ENCFF049UDY 383 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 78 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 97 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 197 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 306 bp overlap
ChIP HepG2 ENCFF076TMZ 313 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 117 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV4 1 dataset
ChIP Hep-G2 ENCSR714YZG.ETV4.Hep-G2 217 bp overlap
ETV5 1 dataset
ChIP HepG2 ENCFF456LSA 305 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 383 bp overlap
EZH2 4 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 138 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 295 bp overlap
ChIP HeLa-S3 ENCFF318LHU 296 bp overlap
ChIP HeLa-S3 ENCFF318LHU 91 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 255 bp overlap
FOXA1 6 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 258 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 325 bp overlap
ChIP HepG2 ENCFF207NVJ 121 bp overlap
ChIP HepG2 ENCFF740VZW 204 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 383 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 203 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 344 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 383 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 330 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 137 bp overlap
ChIP HepG2 ENCFF533COJ 76 bp overlap
ChIP HepG2 ENCFF570ABM 266 bp overlap
ChIP HepG2 ENCFF894AYY 280 bp overlap
ChIP colorectal-cancer_type-C GSE106921.FOXA2.colorectal-cancer_type-C 381 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 287 bp overlap
GABPA 2 datasets
ChIP Hep-G2 GSE72082.GABPA.Hep-G2 147 bp overlap
ChIP Hep-G2 ENCSR269TNX.GABPA.Hep-G2 163 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 224 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 383 bp overlap
HNF4G 2 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 137 bp overlap
ChIP HepG2 ENCFF323ATZ 201 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 104 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 202 bp overlap
JUND 1 dataset
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 383 bp overlap
KLF5 2 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 336 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 175 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 258 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 178 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 120 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 383 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 226 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 124 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 257 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 383 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 311 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 343 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 374 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 210 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 383 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 191 bp overlap
POGZ 1 dataset
ChIP HepG2 ENCFF153UUK 341 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 205 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 90 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 265 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 285 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 377 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 275 bp overlap
RELA 3 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 227 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 353 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 383 bp overlap
REST 3 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 383 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 252 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 290 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 154 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 277 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 234 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 186 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 217 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 152 bp overlap
SOX2 4 datasets
ChIP LK2 GSE137459.SOX2.LK2 347 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 120 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 383 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 81 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 383 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 354 bp overlap
ChIP HepG2 ENCFF628OFQ 276 bp overlap
TFAP4 2 datasets
ChIP DLD-1 GSE46935.TFAP4.DLD-1 163 bp overlap
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 170 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 190 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 383 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 383 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 204 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap