chr12 : 82,682,443 – 82,682,660
217 bp 73 TFs 2 linked genes
This 217 bp open chromatin element is linked to ENSG00000286043 and TMTC2 and is bound by 73 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000286043 4.0 kb Proximal Proximity
TMTC2 4.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:82,677,443 – 82,687,660
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 60 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 217 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 123 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 208 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 217 bp overlap
BRD4 3 datasets
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 217 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 53 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 217 bp overlap
Bach1::Mafk 1 dataset
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 155 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 118 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 203 bp overlap
CTCF 28 datasets
ChIP AG10803 ENCFF549AQK 217 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 147 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF832KWE 217 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 143 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 129 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 137 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 164 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 165 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 131 bp overlap
ChIP body of pancreas ENCFF269EDN 217 bp overlap
ChIP body of pancreas ENCFF438KTE 217 bp overlap
ChIP body of pancreas ENCFF798MEO 217 bp overlap
ChIP body of pancreas ENCFF881RGF 217 bp overlap
ChIP brain ENCFF163BBN 217 bp overlap
ChIP brain ENCFF163BBN 217 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 155 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 181 bp overlap
ChIP lung_left_upper-lobe ENCSR027FSZ.CTCF.lung_left_upper-lobe 185 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 190 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 217 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 217 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 168 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 145 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 201 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 175 bp overlap
ChIP stomach ENCFF370OWL 160 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 213 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 217 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 144 bp overlap
ERF::FOXO1 1 dataset
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
ESR1 2 datasets
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 210 bp overlap
ChIP T-47D_siCont-Veh GSE126004.ESR1.T-47D_siCont-Veh 191 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 122 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 14 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 82 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 116 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 50 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 70 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 212 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 190 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 217 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 195 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 132 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 141 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 177 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 96 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 203 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 63 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
GCM2 1 dataset
Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 217 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 104 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 96 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 217 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 91 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 139 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 175 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 180 bp overlap
MED1 2 datasets
ChIP SGBS GSE64233.MED1.SGBS 217 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 205 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 217 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 115 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 195 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 217 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 217 bp overlap
MYCN 7 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 164 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 126 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 217 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 217 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 217 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 109 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 109 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 202 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 217 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 217 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 167 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 217 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 137 bp overlap
RARA::RXRA 1 dataset
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 217 bp overlap
REST 3 datasets
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 88 bp overlap
ChIP neural ENCSR000BTV.REST.neural 163 bp overlap
ChIP neural cell ENCFF882LXX 174 bp overlap
RORA 2 datasets
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
RORB 2 datasets
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 198 bp overlap
RORC 1 dataset
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 129 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 217 bp overlap
ChIP A-549_AG15690 GSE132290.SMARCA4.A-549_AG15690 143 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 171 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 217 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TCF12 2 datasets
ChIP A-549 ENCSR000BQQ.TCF12.A-549 53 bp overlap
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 217 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 100 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 61 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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