chr12 : 57,016,368 – 57,016,692

324 bp 58 TFs 2 linked genes

This 324 bp open chromatin element is linked to TAC3 and ZBTB39 and is bound by 58 transcription factors.

Linked Genes

2 genes

Gene	Expression	Dist. to TSS	Distance	Link type
TAC3		at TSS	At TSS	Proximity
ZBTB39		9.8 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

BCL11A 1 dataset

ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 90 bp overlap

BRD2 1 dataset

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 167 bp overlap

BRD3 4 datasets

ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 222 bp overlap

ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 124 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 294 bp overlap

ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 324 bp overlap

BRD4 3 datasets

ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 118 bp overlap

ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 107 bp overlap

ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 324 bp overlap

CHD8 1 dataset

ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 99 bp overlap

CREB1 1 dataset

ChIP A-549 ENCSR000BRB.CREB1.A-549 64 bp overlap

CTCF 1 dataset

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 158 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF031ISE 161 bp overlap

ChIP BLaER1 ENCFF364PUR 120 bp overlap

ChIP BLaER1 ENCFF460KDD 171 bp overlap

E2F1 1 dataset

ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 204 bp overlap

ESR1 3 datasets

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 245 bp overlap

ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 219 bp overlap

ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 112 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 115 bp overlap

GATA1 4 datasets

ChIP K-562 GSE107726.GATA1.K-562 221 bp overlap

ChIP K-562 ENCSR000EWM.GATA1.K-562 54 bp overlap

ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 236 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 147 bp overlap

GATA2 3 datasets

ChIP K562 ENCFF513FTZ 111 bp overlap

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 231 bp overlap

ChIP SKH1 GSE87283.GATA2.SKH1 82 bp overlap

GATA3 2 datasets

ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 129 bp overlap

ChIP T-47D GSE51274.GATA3.T-47D 81 bp overlap

GATA3_Nter 1 dataset

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 99 bp overlap

GATA4 2 datasets

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 143 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 243 bp overlap

GFI1B 2 datasets

ChIP K-562 ENCSR509GDT.GFI1B.K-562 113 bp overlap

ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 179 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 123 bp overlap

HAND2 2 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 324 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 100 bp overlap

HIVEP1 1 dataset

ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 125 bp overlap

IKZF1 1 dataset

ChIP K-562 ENCSR395HWC.IKZF1.K-562 137 bp overlap

JUN 1 dataset

ChIP 786-O GSE86092.JUN.786-O 181 bp overlap

MAZ 2 datasets

ChIP HEK293 GSE76494.MAZ.HEK293 223 bp overlap

ChIP K-562 ENCSR000EFX.MAZ.K-562 245 bp overlap

MECOM 1 dataset

ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 151 bp overlap

MTA3 1 dataset

ChIP K-562 ENCSR180NCY.MTA3.K-562 120 bp overlap

NELFA 1 dataset

ChIP K-562_HS GSE112379.NELFA.K-562_HS 312 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 260 bp overlap

NEUROD1 1 dataset

ChIP K-562 ENCSR986CDX.NEUROD1.K-562 89 bp overlap

NFYA 1 dataset

ChIP K-562 GSE26439.NFYA.K-562 206 bp overlap

NFYB 1 dataset

ChIP K-562 GSE26439.NFYB.K-562 194 bp overlap

PKNOX1 2 datasets

ChIP K-562 ENCSR115SMW.PKNOX1.K-562 324 bp overlap

ChIP K562 ENCFF236IUS 226 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 170 bp overlap

POLR2A 2 datasets

ChIP GM23338 ENCFF450WCS 324 bp overlap

ChIP H1 ENCFF566JSR 324 bp overlap

POU5F1 1 dataset

ChIP BG03 GSE21614.POU5F1.BG03 309 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 284 bp overlap

RBFOX2 1 dataset

ChIP K-562 GSE120104.RBFOX2.K-562 138 bp overlap

SMARCA4 2 datasets

ChIP K-562 ENCSR587OQL.SMARCA4.K-562 293 bp overlap

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 238 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 262 bp overlap

SOX2 1 dataset

ChIP RENVM GSE49404.SOX2.RENVM 147 bp overlap

SP1 1 dataset

ChIP HEK293 GSE76494.SP1.HEK293 182 bp overlap

SP3 2 datasets

ChIP HEK293 ENCFF087XLA 324 bp overlap

ChIP HEK293 ENCSR141PZA.SP3.HEK293 239 bp overlap

SP4 1 dataset

ChIP HEK293 GSE76494.SP4.HEK293 198 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 140 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 324 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 179 bp overlap

TAF15 2 datasets

ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 263 bp overlap

ChIP Hep-G2 GSE120104.TAF15.Hep-G2 263 bp overlap

TAL1 1 dataset

ChIP K-562 GSE107726.TAL1.K-562 116 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap

TBP 5 datasets

ChIP K-562 GSE55306.TBP.K-562 279 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 292 bp overlap

ChIP hESC GSE122298.TBP.hESC 216 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 177 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 233 bp overlap

TP63 1 dataset

ChIP keratinocyte GSE33571.TP63.keratinocyte 58 bp overlap

UBTF 1 dataset

ChIP K-562 ENCSR000EFZ.UBTF.K-562 160 bp overlap

YY1 1 dataset

ChIP Huh-7 GSE97411.YY1.Huh-7 218 bp overlap

ZBTB7A 4 datasets

ChIP K-562 GSE103445.ZBTB7A.K-562 308 bp overlap

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 152 bp overlap

ChIP K562 ENCFF579ZGM 294 bp overlap

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 167 bp overlap

ZNF148 1 dataset

ChIP K-562 GSE121133.ZNF148.K-562 240 bp overlap

ZNF281 1 dataset

ChIP K-562 GSE121133.ZNF281.K-562 230 bp overlap

ZNF292 1 dataset

ChIP HepG2 ENCFF975MAJ 324 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 226 bp overlap

ZNF770 1 dataset

ChIP HEK293 GSE76494.ZNF770.HEK293 123 bp overlap