chr12 : 29,884,943 – 29,885,335
392 bp 74 TFs 0 linked genes
This 392 bp open chromatin element has no linked target genes and is bound by 74 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:29,879,943 – 29,890,335
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 175 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 205 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 250 bp overlap
BCL6 2 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Motif DE_24h DE_24h-BCL6_MA0463.3 13 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 243 bp overlap
ChIP Ishikawa ENCFF010USJ 254 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 331 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 197 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 118 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 157 bp overlap
ChIP H1 ENCFF937OPV 173 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 278 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 197 bp overlap
ESR1 7 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 175 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 161 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 153 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 211 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 210 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 115 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 162 bp overlap
FEZF2 4 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 188 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 309 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 353 bp overlap
ChIP DE DE-GATA4-2 392 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 256 bp overlap
ChIP DE DE-GATA6-2 352 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 342 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 392 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 392 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 319 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
INSM1 4 datasets
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 392 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 363 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 392 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 293 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 286 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 392 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 187 bp overlap
MAFF 2 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif DE_24h DE_24h-MAFF_MA0495.4 11 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 277 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 367 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif DE_24h DE_24h-Mafb_MA0117.3 11 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 260 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 197 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 70 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_24h DE_24h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 386 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 275 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 295 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 219 bp overlap
REL 2 datasets
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
RELA 2 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 108 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif DE_24h DE_24h-Rfx6_MA1724.2 9 bp overlap
SETDB1 4 datasets
ChIP HEK293 ENCFF676PLV 392 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 337 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 337 bp overlap
ChIP WN8532 GSE36579.SETDB1.WN8532 171 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 392 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 360 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 294 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 330 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 293 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 148 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 282 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 238 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 307 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 201 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 269 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
TCF12 4 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 220 bp overlap
ChIP Ishikawa ENCFF467DDW 350 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 277 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TEAD1 3 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif DE_24h DE_24h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 342 bp overlap
TEAD4 6 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_24h DE_24h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 392 bp overlap
ChIP H1 ENCFF778PAX 156 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 107 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0524.3 11 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 215 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_24h DE_24h-TFAP2E_MA1569.2 9 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 117 bp overlap
ChIP Ishikawa ENCFF728IEG 261 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 388 bp overlap
ChIP WTC11 ENCFF699QGS 380 bp overlap
USF2 3 datasets
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 163 bp overlap
ChIP WTC11 ENCFF139JAW 165 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 241 bp overlap
ChIP Ishikawa ENCFF505XQX 255 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 191 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF136 2 datasets
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
Motif DE_24h DE_24h-ZNF136_MA1588.1 15 bp overlap
ZNF35 2 datasets
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
Motif DE_24h DE_24h-ZNF35_MA2333.1 7 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 195 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_24h DE_24h-ZSCAN4_MA1155.1 15 bp overlap
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