chr12 : 29,608,636 29,610,020
1,384 bp 81 TFs 0 linked genes
This 1.4 kb open chromatin element has no linked target genes and is bound by 81 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:29,603,636 – 29,615,020
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 112 bp overlap
ATF4 1 dataset
Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap
BCL6B 1 dataset
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 57 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 320 bp overlap
BRD3 3 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 247 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 309 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 266 bp overlap
BRD4 6 datasets
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 309 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 268 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 178 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 297 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 118 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 188 bp overlap
Bach1::Mafk 2 datasets
Motif DE_48h DE_48h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap
CEBPG 1 dataset
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
CREB1 1 dataset
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 343 bp overlap
CTCF 3 datasets
ChIP endodermal cell ENCFF471YCZ 342 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 99 bp overlap
ChIP BLaER1 ENCFF364PUR 208 bp overlap
DPF2 3 datasets
ChIP GM12878 ENCFF681AJV 225 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 280 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 381 bp overlap
EBF1 1 dataset
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 177 bp overlap
ChIP hESC GSE26097.EOMES.hESC 301 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 215 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 238 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 277 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 265 bp overlap
ETV2 1 dataset
Motif DE_60h DE_60h-ETV2_MA0762.2 9 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 526 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 554 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 152 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 317 bp overlap
ChIP DE DE-FOXA2-1 544 bp overlap
ChIP DE DE-FOXA2-2 305 bp overlap
ChIP DE DE-FOXA2-2 630 bp overlap
FOXH1 4 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 161 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 288 bp overlap
ChIP DE DE-GATA4-1 456 bp overlap
ChIP DE DE-GATA4-2 1343 bp overlap
ChIP G296S GSE85628.GATA4.G296S 413 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 413 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 211 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 222 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 332 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 228 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 411 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 1079 bp overlap
ChIP DE DE-GATA6-2 1343 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 114 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 448 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 88 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 470 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 292 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 303 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 319 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 228 bp overlap
HOXD12 2 datasets
Motif DE_36h DE_36h-HOXD12_MA0873.2 10 bp overlap
Motif DE_60h DE_60h-HOXD12_MA0873.2 10 bp overlap
Hmx2 3 datasets
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
Motif DE_72h DE_72h-Hmx2_MA0897.2 15 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 641 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 200 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 215 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAF::NFE2 2 datasets
Motif DE_48h DE_48h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_72h DE_72h-MEIS3_MA0775.2 7 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 177 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 165 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 211 bp overlap
ChIP D283-Med GSE92582.NEUROD1.D283-Med 255 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 223 bp overlap
NR3C1 1 dataset
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 283 bp overlap
Nfe2l2 2 datasets
Motif DE_48h DE_48h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
PBX1 1 dataset
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 209 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 414 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 244 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 201 bp overlap
Prdm4 1 dataset
Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap
RELA 1 dataset
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 333 bp overlap
SMAD2 4 datasets
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 247 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 242 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 450 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1017 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 958 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 902 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 981 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 469 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1124 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 126 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 320 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 613 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 225 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 215 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 225 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 292 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 188 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 246 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 224 bp overlap
SPI1 1 dataset
ChIP THP-1 GSE128834.SPI1.THP-1 120 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 175 bp overlap
SUZ12 2 datasets
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 344 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 276 bp overlap
Spz1 1 dataset
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 215 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 277 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX5 3 datasets
ChIP G296S GSE85628.TBX5.G296S 293 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 293 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 294 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCFF433DMU 149 bp overlap
TP63 1 dataset
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 182 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZBTB18 3 datasets
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 106 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 202 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 188 bp overlap
ZNF189 2 datasets
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
ZNF343 1 dataset
Motif DE_72h DE_72h-ZNF343_MA1711.2 16 bp overlap
ZNF582 1 dataset
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap
ZNF701 2 datasets
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap