chr12 : 14,267,660 – 14,268,650
990 bp 60 TFs 3 linked genes
This 990 bp open chromatin element is linked to ATF7IP, ENSG00000290040, and PLBD1 and is bound by 60 transcription factors.
Linked Genes
3 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATF7IP 97.5 kb Distal Multiome+HiCAR
ENSG00000290040 97.9 kb Distal Multiome+HiCAR
PLBD1 299.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:14,262,660 – 14,273,650
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 171 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 390 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 219 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 299 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 465 bp overlap
BRD4 6 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 311 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 343 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 225 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 221 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 320 bp overlap
ChIP hESC GSE33281.BRD4.hESC 93 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 138 bp overlap
CEBPB 2 datasets
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 249 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 145 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 191 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CREBBP 2 datasets
ChIP monocyte_IFNg-LPS GSE131294.CREBBP.monocyte_IFNg-LPS 139 bp overlap
ChIP monocyte_LPS GSE131294.CREBBP.monocyte_LPS 132 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 497 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 216 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 117 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 146 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 396 bp overlap
ChIP DE DE-FOXA2-2 352 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 579 bp overlap
ChIP DE DE-GATA4-2 801 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 642 bp overlap
ChIP DE DE-GATA6-2 871 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 146 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 743 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 164 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 336 bp overlap
HMBOX1 5 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 194 bp overlap
ChIP K562 ENCFF055GAZ 373 bp overlap
ChIP K562 ENCFF055GAZ 531 bp overlap
ChIP K562 ENCFF055GAZ 531 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 99 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 785 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 167 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 158 bp overlap
MBD2 1 dataset
ChIP K-562 ENCSR221GAN.MBD2.K-562 139 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 222 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 825 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 590 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 715 bp overlap
ChIP hESC GSE18292.NANOG.hESC 175 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 121 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 61 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 849 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 271 bp overlap
OSR1 1 dataset
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 196 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 270 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 822 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 158 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 786 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 130 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 617 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 318 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 254 bp overlap
PRDM10 2 datasets
ChIP K-562 ENCSR120MPG.PRDM10.K-562 213 bp overlap
ChIP K562 ENCFF740YLK 417 bp overlap
RAD21 1 dataset
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 177 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 147 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 223 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 236 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 410 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 411 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 322 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 483 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 259 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 325 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 214 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 97 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 320 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 739 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 646 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 209 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 199 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 144 bp overlap
STAT1 2 datasets
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 252 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 214 bp overlap
STAT3 2 datasets
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 311 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 387 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 294 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 272 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 173 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 141 bp overlap
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