chr11 : 121,298,678 – 121,299,105
427 bp 73 TFs 1 linked gene
This 427 bp open chromatin element is linked to SC5D and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SC5D 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:121,293,678 – 121,304,105
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP H1 ENCFF295GZO 425 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 235 bp overlap
ChIP K562 ENCFF674KTF 250 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BRD4 1 dataset
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 63 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 315 bp overlap
CEBPB 1 dataset
ChIP HCT116 ENCFF097OLY 328 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CTCF 5 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 252 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 365 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 412 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 180 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
E2F8 1 dataset
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 297 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 57 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 53 bp overlap
Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 55 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 267 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 169 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 103 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 290 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 341 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 237 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 140 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 7 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 168 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 402 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 419 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 206 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 247 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 224 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 90 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 427 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 427 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 228 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
NUP98-HOXA9 1 dataset
ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 115 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
OSR2 4 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif DE_24h DE_24h-OSR2_MA1646.2 8 bp overlap
ChIP HEK293 ENCFF875BDB 394 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 355 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 145 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 427 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 363 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 140 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 274 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 337 bp overlap
ChIP HepG2 ENCFF554DMZ 137 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 71 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 94 bp overlap
SETDB1 4 datasets
ChIP HEK293 ENCFF676PLV 427 bp overlap
ChIP HEK293 ENCFF676PLV 204 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 427 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 341 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
SP1 1 dataset
ChIP H1 ENCFF263FUH 251 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 197 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 221 bp overlap
STAT3 3 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 139 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 125 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 62 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
TFDP1 1 dataset
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
TRIM24 3 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 229 bp overlap
ChIP K562 ENCFF616RIL 352 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 128 bp overlap
TRIM28 5 datasets
ChIP HEK293 ENCFF582MWI 427 bp overlap
ChIP HEK293 ENCFF582MWI 386 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 272 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 114 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 244 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP HCT116 ENCFF330PYP 241 bp overlap
ChIP WTC11 ENCFF699QGS 420 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 407 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 279 bp overlap
YY1 1 dataset
ChIP H1 ENCFF524BTL 315 bp overlap
ZBTB33 3 datasets
ChIP GM12878 ENCFF818EFA 240 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 217 bp overlap
ChIP K562 ENCFF875HLX 289 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 116 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 137 bp overlap
ChIP WTC11 ENCFF537KXI 297 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF700 2 datasets
ChIP K-562 ENCSR959BQO.ZNF700.K-562 217 bp overlap
ChIP K562 ENCFF657OXY 265 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
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