chr11 : 113,273,470 113,274,284
814 bp 55 TFs 4 linked genes
This 814 bp open chromatin element is linked to 4 target genes and is bound by 55 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
NCAM1-AS1 at TSS At TSS Proximity
TTC12 40.6 kb Distal Multiome
LINC02762 983.8 kb Distal Multiome+HiCAR
PTS 1047.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:113,268,470 – 113,279,284
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 97 bp overlap
BRD4 12 datasets
ChIP BE2C GSE80151.BRD4.BE2C 272 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 106 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 305 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 268 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 798 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 272 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 190 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 319 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 286 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 814 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 396 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 169 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 206 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 305 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 444 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 250 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 242 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 214 bp overlap
CTCF 12 datasets
ChIP BE2C ENCSR000DQD.CTCF.BE2C 165 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 244 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 120 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 226 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 316 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 376 bp overlap
ChIP retina_AB1-FW23 GSE86981.CTCF.retina_AB1-FW23 289 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 196 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 498 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 432 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 483 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 143 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 230 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 159 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 326 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 128 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 115 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 262 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 244 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 413 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 297 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 245 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 440 bp overlap
ChIP SK-N-SH ENCFF764OZD 199 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 408 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 226 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 222 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 258 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 171 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 241 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 432 bp overlap
ChIP DE DE-GATA4-2 498 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 446 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 522 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 529 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 593 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 791 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 551 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 656 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 526 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 423 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 500 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 507 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 418 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 271 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 210 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 305 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 302 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 216 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 286 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 323 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 257 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 292 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 190 bp overlap
MYCN 7 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 244 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 632 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 346 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 164 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 257 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 248 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 116 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 286 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 209 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 241 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 265 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 358 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 247 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 566 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 187 bp overlap
POU5F1 1 dataset
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 91 bp overlap
RAD21 4 datasets
ChIP IMR-5 GSE78957.RAD21.IMR-5 149 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 258 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 341 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 409 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 210 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 454 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 252 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 182 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 497 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 444 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 398 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 303 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 459 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 511 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 499 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 238 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 145 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 145 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 284 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 367 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 316 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 374 bp overlap
ChIP SK-N-SH ENCFF270OWF 119 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 238 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 238 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 338 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 64 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 74 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 450 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 450 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 110 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 97 bp overlap