chr1 : 200,668,644 200,669,109
465 bp 68 TFs 2 linked genes
This 465 bp open chromatin element is linked to DDX59-AS1 and DDX59 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
DDX59-AS1 396 bp At TSS Proximity
DDX59 797 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:200,663,644 – 200,674,109
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 280 bp overlap
AR 1 dataset
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 133 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 465 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 161 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 206 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 83 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 69 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 100 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 411 bp overlap
CDX2 3 datasets
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 159 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 245 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 117 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 114 bp overlap
CHD1 1 dataset
ChIP A-549 ENCSR398YBM.CHD1.A-549 70 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF576ERP 103 bp overlap
CTCF 2 datasets
ChIP mucosa of descending colon ENCFF478SWS 369 bp overlap
ChIP mucosa of descending colon ENCFF478SWS 263 bp overlap
DPF2 2 datasets
ChIP K562 ENCFF775HUO 465 bp overlap
ChIP K562 ENCFF775HUO 324 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 104 bp overlap
E2F1 1 dataset
ChIP K562 ENCFF163BSY 76 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 245 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 291 bp overlap
ChIP DE DE-FOXA2-2 327 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 244 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 155 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 257 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 149 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 149 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 329 bp overlap
ChIP SH-SY5Y ENCFF485YIB 285 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 210 bp overlap
GATA3 5 datasets
ChIP MCF-7 ENCFF352QVM 135 bp overlap
ChIP MCF-7 ENCFF437NQS 278 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 197 bp overlap
ChIP SH-SY5Y ENCFF475HYF 408 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 266 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 459 bp overlap
ChIP DE DE-GATA4-2 465 bp overlap
ChIP G296S GSE85628.GATA4.G296S 121 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 373 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 465 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 345 bp overlap
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 206 bp overlap
ChIP DE DE-GATA6-1 454 bp overlap
ChIP DE DE-GATA6-2 465 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 465 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 465 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 465 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 465 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 360 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 465 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 465 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 465 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 201 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 453 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 447 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 391 bp overlap
GTF2F1 1 dataset
ChIP HeLa-S3 ENCFF868VGE 304 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 465 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 200 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 175 bp overlap
ChIP K562 ENCFF744ALD 421 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 248 bp overlap
HEY1 1 dataset
ChIP K562 ENCFF431CYU 121 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 98 bp overlap
IKZF1 4 datasets
ChIP GM12878 ENCFF616FJX 104 bp overlap
ChIP K562 ENCFF348IBL 399 bp overlap
ChIP K562 ENCFF771OHZ 373 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 128 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 165 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 362 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 233 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 292 bp overlap
ChIP K562 ENCFF133OLU 257 bp overlap
KMT2A 2 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 64 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 68 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 143 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 161 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 175 bp overlap
MGA 2 datasets
ChIP K562 ENCFF140CEX 336 bp overlap
ChIP K562 ENCFF140CEX 103 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR390VGH.MNT.K-562 100 bp overlap
MYC 2 datasets
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 227 bp overlap
ChIP U-87MG GSE36354.MYC.U-87MG 132 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 152 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 143 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 198 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 128 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 310 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 237 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 71 bp overlap
ChIP K562 ENCFF967GRF 146 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
REST 1 dataset
ChIP liver ENCFF577AZT 143 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCFF171OVM 82 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 444 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 434 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 343 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 331 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 455 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 449 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 83 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 67 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 279 bp overlap
ChIP K562 ENCFF506JCB 465 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 163 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 244 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 160 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 70 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 133 bp overlap
TRIM25 1 dataset
ChIP K562 ENCFF786UTW 133 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 204 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF648EZG 378 bp overlap
ZBTB40 4 datasets
ChIP GM12878 ENCFF346DYM 388 bp overlap
ChIP GM12878 ENCFF346DYM 131 bp overlap
ChIP K562 ENCFF521DSV 174 bp overlap
ChIP MCF-7 ENCFF044DWL 342 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 214 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 200 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 116 bp overlap
ZNF175 2 datasets
ChIP K562 ENCFF497AEJ 320 bp overlap
ChIP K562 ENCFF497AEJ 91 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 284 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 175 bp overlap