chr1 : 199,865,801 – 199,866,542
741 bp 82 TFs 1 linked gene
This 741 bp open chromatin element is linked to NR5A2 and is bound by 82 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NR5A2 176.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:199,860,801 – 199,871,542
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP A-549 GSE85352.ARNT.A-549 269 bp overlap
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ATF3 6 datasets
ChIP K562 ENCFF604FPV 77 bp overlap
ChIP K562 ENCFF604FPV 276 bp overlap
ChIP liver ENCFF375GID 312 bp overlap
ChIP liver ENCFF867MFZ 59 bp overlap
ChIP liver ENCFF867MFZ 280 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 110 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCL6 1 dataset
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 70 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 217 bp overlap
CEBPB 1 dataset
ChIP HepG2 ENCFF536NTI 221 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 63 bp overlap
ChIP BLaER1 ENCFF364PUR 252 bp overlap
ChIP BLaER1 ENCFF460KDD 316 bp overlap
E2F6 1 dataset
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 154 bp overlap
ERF::FOXI1 1 dataset
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP liver ERP002306.FOXA1.liver 260 bp overlap
FOXA2 3 datasets
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP liver ENCFF877SFI 345 bp overlap
ChIP liver ENCFF888VJF 345 bp overlap
GABPA 1 dataset
ChIP liver ENCFF500III 320 bp overlap
HNF4A 4 datasets
ChIP HepG2 ENCFF146SSF 353 bp overlap
ChIP liver ENCFF354NRH 336 bp overlap
ChIP liver ENCFF449HPV 335 bp overlap
ChIP liver ERP002306.HNF4A.liver 268 bp overlap
HNF4G 3 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 166 bp overlap
ChIP liver ENCFF170YNZ 322 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 111 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF1 4 datasets
ChIP K-562 ENCSR854MCV.IRF1.K-562 352 bp overlap
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 685 bp overlap
ChIP K562 ENCFF277KTJ 277 bp overlap
ChIP K562 ENCFF277KTJ 476 bp overlap
IRF2 3 datasets
ChIP K-562 ENCSR376WCJ.IRF2.K-562 61 bp overlap
ChIP K562 ENCFF248LJZ 138 bp overlap
ChIP K562 ENCFF248LJZ 337 bp overlap
JUND 4 datasets
ChIP liver ENCFF007WWT 236 bp overlap
ChIP liver ENCFF557PGE 340 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 81 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 182 bp overlap
MAX 2 datasets
ChIP liver ENCFF092GVW 356 bp overlap
ChIP liver ENCFF584QGB 358 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 404 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 283 bp overlap
NFYB 1 dataset
ChIP HepG2 ENCFF174VYX 360 bp overlap
NFYC 1 dataset
ChIP HepG2 ENCFF836FYP 332 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF427MRU 246 bp overlap
ChIP liver ENCFF565JGD 401 bp overlap
ONECUT1 2 datasets
ChIP HepG2 ENCFF243FIR 282 bp overlap
ChIP liver ERP002306.ONECUT1.liver 211 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
POLR2A 1 dataset
ChIP right lobe of liver ENCFF026NCK 476 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 4 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 378 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 66 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 295 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
RAD21 1 dataset
ChIP liver ENCFF485PAC 389 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REST 5 datasets
ChIP liver ENCFF240FWT 340 bp overlap
ChIP liver ENCFF240FWT 485 bp overlap
ChIP liver ENCFF577AZT 312 bp overlap
ChIP liver ENCSR893QWP.REST.liver 51 bp overlap
ChIP liver ENCSR867WPH.REST.liver 166 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 93 bp overlap
ChIP liver ENCFF807CIA 294 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 140 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 238 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 292 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 81 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 296 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 302 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 348 bp overlap
ChIP liver ENCFF769YSM 347 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TAF1 2 datasets
ChIP liver ENCFF610UQP 479 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 208 bp overlap
TBX18 1 dataset
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
TCF12 1 dataset
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TP53 1 dataset
ChIP H9 GSE39912.TP53.H9 226 bp overlap
Tbx6 1 dataset
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
YY1 4 datasets
ChIP WA01 GSE39096.YY1.WA01 150 bp overlap
ChIP liver ENCFF400MBC 370 bp overlap
ChIP liver ENCFF400MBC 572 bp overlap
ChIP liver ENCFF515BWJ 435 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZBTB33 2 datasets
ChIP liver ENCFF592BJA 68 bp overlap
ChIP liver ENCFF592BJA 358 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZIC5 1 dataset
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZNF20 2 datasets
ChIP HepG2 ENCFF518BKZ 206 bp overlap
ChIP HepG2 ENCFF518BKZ 589 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 154 bp overlap
ZNF610 1 dataset
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF75A 1 dataset
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
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