chr11 : 40,280,439 40,280,872
433 bp 87 TFs 0 linked genes
This 433 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:40,275,439 – 40,285,872
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 218 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BRD4 5 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 337 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 307 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 198 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 95 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 331 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 188 bp overlap
CTCF 3 datasets
ChIP dorsolateral prefrontal cortex ENCFF338KEP 221 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 324 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 153 bp overlap
ChIP BLaER1 ENCFF460KDD 115 bp overlap
Crx 1 dataset
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
DPRX 1 dataset
Motif ES_0h ES_0h-DPRX_MA1480.2 9 bp overlap
Dlx2 1 dataset
Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap
Dmbx1 1 dataset
Motif ES_0h ES_0h-Dmbx1_MA0883.2 10 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 421 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 433 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HSF1 1 dataset
Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
IKZF1 2 datasets
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
ChIP GM12878 ENCFF753XDO 136 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCFF238LYK 106 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 57 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 433 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 158 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 108 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 168 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 223 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 433 bp overlap
MYCN 6 datasets
ChIP BE2C GSE80151.MYCN.BE2C 76 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 235 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 91 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 141 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 76 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 58 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
Nr2e1 1 dataset
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
OLIG2 4 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 168 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 324 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 309 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 433 bp overlap
OTX1 1 dataset
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 397 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 228 bp overlap
PITX1 1 dataset
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif ES_0h ES_0h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
POLR2A 1 dataset
ChIP PFSK-1 ENCFF576NIT 154 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 81 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 433 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 294 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 144 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 160 bp overlap
RHOXF1 1 dataset
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 182 bp overlap
SOX12 1 dataset
Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif ES_0h ES_0h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 297 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 150 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 251 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 156 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 404 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 433 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 433 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 235 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF547 1 dataset
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap