chr1 : 198,031,735 – 198,032,235

500 bp 100 TFs 0 linked genes

This 500 bp open chromatin element has no linked target genes and is bound by 100 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

100 transcription factors

AR 2 datasets

ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 132 bp overlap

ChIP LNCaP GSE80256.AR.LNCaP 196 bp overlap

Crx 2 datasets

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

DPRX 1 dataset

Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap

EOMES 3 datasets

Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap

Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap

ChIP hESC GSE26097.EOMES.hESC 432 bp overlap

ESR1 2 datasets

Motif DE_36h DE_36h-ESR1_MA0112.4 15 bp overlap

Motif DE_48h DE_48h-ESR1_MA0112.4 15 bp overlap

FEZF2 2 datasets

Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap

Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap

FIGLA 2 datasets

Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap

Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap

FOXA1 1 dataset

Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap

FOXA2 4 datasets

ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 145 bp overlap

ChIP DE DE-FOXA2-1 500 bp overlap

ChIP DE DE-FOXA2-2 483 bp overlap

Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap

FOXA3 1 dataset

Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap

FOXD1 1 dataset

Motif DE_36h DE_36h-FOXD1_MA0031.2 7 bp overlap

FOXD3 1 dataset

Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap

FOXF2 1 dataset

Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap

FOXG1 1 dataset

Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap

FOXH1 2 datasets

Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap

Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap

FOXI1 1 dataset

Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap

FOXK1 1 dataset

Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap

FOXN3 1 dataset

Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap

FOXO4 1 dataset

Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap

FOXP1 1 dataset

Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap

FOXP2 1 dataset

Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap

FOXP4 1 dataset

Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap

Foxj3 1 dataset

Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap

Foxo1 1 dataset

Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap

GATA1 1 dataset

Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap

GATA2 2 datasets

Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap

Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap

GATA4 6 datasets

ChIP DE DE-GATA4-1 500 bp overlap

ChIP DE DE-GATA4-2 500 bp overlap

Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap

Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 453 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 418 bp overlap

GATA6 12 datasets

ChIP DE DE-GATA6-1 500 bp overlap

ChIP DE DE-GATA6-2 500 bp overlap

Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap

Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 385 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 289 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 298 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 500 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 408 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 436 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 495 bp overlap

ChIP foregut GSE117136.GATA6.foregut 486 bp overlap

GSC 2 datasets

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Gata3 2 datasets

Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap

Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 396 bp overlap

MAX::MYC 2 datasets

Motif DE_36h DE_36h-MAXMYC_MA0059.2 10 bp overlap

Motif DE_48h DE_48h-MAXMYC_MA0059.2 10 bp overlap

MGA 2 datasets

Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap

Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap

MXI1 2 datasets

Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap

Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap

NR2C1 2 datasets

Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap

Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap

NR2C2 2 datasets

Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap

Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap

Nr1H2 2 datasets

Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap

Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 2 datasets

Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap

Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 2 datasets

Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap

Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap

Nr2F6 2 datasets

Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap

Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap

OTX1 2 datasets

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

PHOX2B 1 dataset

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

PITX1 2 datasets

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

PKNOX2 2 datasets

Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap

Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap

Ptf1A 2 datasets

Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap

Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap

RHOXF1 2 datasets

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

RORB 1 dataset

Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap

RORC 1 dataset

Motif DE_36h DE_36h-RORC_MA1151.2 10 bp overlap

RXRA::VDR 2 datasets

Motif DE_36h DE_36h-RXRAVDR_MA0074.1 15 bp overlap

Motif DE_48h DE_48h-RXRAVDR_MA0074.1 15 bp overlap

Rarg 2 datasets

Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap

Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 332 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 500 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 416 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 440 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 296 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 378 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 371 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 500 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 500 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 306 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 258 bp overlap

SNAI2 2 datasets

Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap

Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap

SNAI3 2 datasets

Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap

Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 360 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 500 bp overlap

TBR1 2 datasets

Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap

Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap

TBX1 2 datasets

Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap

Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap

TBX15 2 datasets

Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap

Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap

TBX18 2 datasets

Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap

Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap

TBX2 2 datasets

Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap

Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap

TBX21 2 datasets

Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap

Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap

TBX3 2 datasets

Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap

Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap

TBX4 2 datasets

Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap

Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap

TBX5 2 datasets

Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap

Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap

TFAP4::ETV1 2 datasets

Motif DE_36h DE_36h-TFAP4ETV1_MA1966.2 13 bp overlap

Motif DE_48h DE_48h-TFAP4ETV1_MA1966.2 13 bp overlap

TGIF1 2 datasets

Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap

Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap

TGIF2 2 datasets

Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap

Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap

TRPS1 2 datasets

Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap

Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap

Tbx6 2 datasets

Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap

Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap

ZBTB18 2 datasets

Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap

Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap

ZEB1 2 datasets

Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap

Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap

ZNF135 2 datasets

Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap

Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap

ZNF324 1 dataset

Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap

ZNF354C 2 datasets

Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap

Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap

ZNF449 1 dataset

Motif DE_36h DE_36h-ZNF449_MA1656.2 10 bp overlap

ZNF460 1 dataset

Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap

ZNF707 1 dataset

Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap

ZNF708 1 dataset

Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap

ZNF76 1 dataset

Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap

ZSCAN16 1 dataset

Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap

Zfp809 2 datasets

Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap

Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap