chr10 : 99,530,180 99,530,606
426 bp 75 TFs 2 linked genes
This 426 bp open chromatin element is linked to NKX2-3 and LINC01475 and is bound by 75 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NKX2-3 2.3 kb Proximal Proximity
LINC01475 2.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:99,525,180 – 99,535,606
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 324 bp overlap
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 222 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 197 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 426 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 146 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 218 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 78 bp overlap
BRD4 4 datasets
ChIP SEM GSE83671.BRD4.SEM 295 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 312 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 310 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 205 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 236 bp overlap
ChIP H1 ENCFF095JHA 371 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 127 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 300 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 284 bp overlap
CREBBP 1 dataset
ChIP NCI-H3396 GSE32349.CREBBP.NCI-H3396 92 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 336 bp overlap
CTCF 8 datasets
ChIP B-cell ENCSR000AUV.CTCF.B-cell 51 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 151 bp overlap
ChIP endodermal cell ENCFF471YCZ 192 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 426 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 143 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 150 bp overlap
ChIP spleen ENCSR595BPR.CTCF.spleen 342 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 223 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
E2F6 1 dataset
ChIP H1 ENCFF785DWK 90 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 215 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 263 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 408 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 264 bp overlap
ESR1_Y537C 1 dataset
ChIP MCF-7_ESR1_mutant_LTED GSE100074.ESR1_Y537C.MCF-7_ESR1_mutant_LTED 109 bp overlap
EZH2 32 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 399 bp overlap
ChIP GM23248 ENCFF404ZHM 159 bp overlap
ChIP GM23248 ENCFF506FWX 257 bp overlap
ChIP GM23248 ENCFF506FWX 53 bp overlap
ChIP GM23338 ENCFF613YON 426 bp overlap
ChIP GM23338 ENCFF886DXX 225 bp overlap
ChIP H1 ENCFF232NZA 426 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 143 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 213 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 218 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 320 bp overlap
ChIP SK-N-SH ENCFF657FZK 60 bp overlap
ChIP SK-N-SH ENCFF657FZK 422 bp overlap
ChIP SK-N-SH ENCFF657FZK 219 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 287 bp overlap
ChIP astrocyte ENCFF365JTP 426 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 84 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 426 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 394 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 426 bp overlap
ChIP fibroblast of lung ENCFF479BAW 152 bp overlap
ChIP fibroblast of lung ENCFF479BAW 265 bp overlap
ChIP hESC GSE113817.EZH2.hESC 277 bp overlap
ChIP hepatocyte ENCFF118DKH 138 bp overlap
ChIP hepatocyte ENCFF552DZB 426 bp overlap
ChIP keratinocyte ENCFF070STK 148 bp overlap
ChIP keratinocyte ENCFF070STK 364 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 77 bp overlap
ChIP myotube ENCFF857GWB 417 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 426 bp overlap
ChIP neural progenitor cell ENCFF018MKA 426 bp overlap
ChIP neural progenitor cell ENCFF472NFV 426 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GATA1 1 dataset
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 166 bp overlap
GATA2 2 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 171 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 226 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 101 bp overlap
ChIP DE DE-GATA4-2 124 bp overlap
ChIP foregut GSE117136.GATA4.foregut 120 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 79 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 146 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 191 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 214 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 332 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 326 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 357 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 173 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 139 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 195 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 307 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 311 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 278 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 382 bp overlap
KMT2A 2 datasets
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 426 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 301 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 107 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 59 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 192 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 192 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 285 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 337 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 351 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 317 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 128 bp overlap
POLR2A 2 datasets
ChIP spleen ENCFF446ZGT 412 bp overlap
ChIP spleen ENCFF706IUS 303 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 426 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 175 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 261 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 331 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 426 bp overlap
RARA 1 dataset
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 70 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 53 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 426 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 73 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 100 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 253 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 325 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 198 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 146 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 146 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 229 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 325 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 426 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 65 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 264 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 247 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 251 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 270 bp overlap
SUZ12 6 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 234 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 426 bp overlap
ChIP H1 ENCFF881NFR 426 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 366 bp overlap
ChIP NT2/D1 ENCFF574SXS 426 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 141 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 134 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 84 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 177 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 308 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 204 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 245 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 317 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 360 bp overlap
ZFX 2 datasets
ChIP HEK293T ENCFF402JZW 426 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 353 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 310 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 272 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 155 bp overlap
ChIP HEK293 ENCFF336CWQ 358 bp overlap
ZNF282 1 dataset
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 426 bp overlap