chr10 : 397,792 398,580
788 bp 81 TFs 2 linked genes
This 788 bp open chromatin element is linked to ZMYND11 and DIP2C and is bound by 81 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ZMYND11 263.5 kb Distal Multiome
DIP2C 291.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:392,792 – 403,580
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 182 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 159 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 130 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 108 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 152 bp overlap
CDX1 3 datasets
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
Motif DE_72h DE_72h-CDX1_MA0878.3 10 bp overlap
CDX4 3 datasets
Motif DE_48h DE_48h-CDX4_MA1473.2 9 bp overlap
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
Motif DE_72h DE_72h-CDX4_MA1473.2 9 bp overlap
CEBPA 1 dataset
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 202 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 169 bp overlap
CTCF 3 datasets
ChIP parathyroid adenoma ENCFF173NJK 124 bp overlap
ChIP thyroid gland ENCFF631QRY 153 bp overlap
ChIP upper lobe of right lung ENCFF065JCM 118 bp overlap
CUX1 1 dataset
Motif DE_48h DE_48h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_48h DE_48h-CUX2_MA0755.2 9 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF274GAT 261 bp overlap
ChIP BLaER1 ENCFF274GAT 254 bp overlap
ChIP BLaER1 ENCFF364PUR 257 bp overlap
DPF2 2 datasets
ChIP MCF-7 ENCFF712EXQ 261 bp overlap
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 236 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 116 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 135 bp overlap
ESR1 10 datasets
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 99 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 53 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 156 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 121 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 71 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 243 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 69 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 90 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 167 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 93 bp overlap
ESRRA 1 dataset
ChIP MCF-7 ENCSR954WVZ.ESRRA.MCF-7 163 bp overlap
ETV2::DRGX 3 datasets
Motif DE_48h DE_48h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_60h DE_60h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_72h DE_72h-ETV2DRGX_MA1940.2 12 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 484 bp overlap
ChIP DE DE-FOXA2-2 651 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 129 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 490 bp overlap
ChIP DE DE-GATA4-2 648 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 226 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 567 bp overlap
ChIP DE DE-GATA6-2 628 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 700 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 593 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 613 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 532 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 511 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 637 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 499 bp overlap
GRHL1 1 dataset
ChIP MCF-7 GSE140185.GRHL1.MCF-7 227 bp overlap
GRHL2 7 datasets
ChIP HBE GSE46194.GRHL2.HBE 159 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 234 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 112 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 272 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 226 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 154 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 206 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HOXA10 3 datasets
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXB13 3 datasets
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
HOXD9 3 datasets
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
Hmga1 2 datasets
Motif DE_48h DE_48h-Hmga1_MA2124.1 8 bp overlap
Motif DE_72h DE_72h-Hmga1_MA2124.1 8 bp overlap
IKZF2 3 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
MGA::EVX1 2 datasets
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
MYB 1 dataset
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NR3C1 2 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 80 bp overlap
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 220 bp overlap
ONECUT1 2 datasets
Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 395 bp overlap
ONECUT3 1 dataset
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
PBX3 1 dataset
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 2 datasets
ChIP thyroid gland ENCFF979LRR 164 bp overlap
ChIP thyroid gland ENCFF979LRR 365 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 137 bp overlap
SMAD2 2 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 217 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 674 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 788 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 788 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 788 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 788 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 701 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 732 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 788 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 243 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 137 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 211 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 307 bp overlap
SMARCB1 5 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 225 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 165 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 155 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 98 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 176 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 200 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 367 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 210 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 303 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 351 bp overlap
STAT3 9 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 183 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 184 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 128 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 192 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 148 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 54 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 210 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 161 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 154 bp overlap
TBR1 2 datasets
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX3 2 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TFAP2A 1 dataset
Motif DE_48h DE_48h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_48h DE_48h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_48h DE_48h-TFAP2C_MA0524.3 11 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 178 bp overlap
YY1AP1 1 dataset
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 144 bp overlap
ZHX2 2 datasets
ChIP MCF-7 ENCFF733XRY 359 bp overlap
ChIP MCF-7 ENCSR876UYH.ZHX2.MCF-7 146 bp overlap
ZNF213 1 dataset
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF524 3 datasets
Motif DE_48h DE_48h-ZNF524_MA2096.1 9 bp overlap
Motif DE_60h DE_60h-ZNF524_MA2096.1 9 bp overlap
Motif DE_72h DE_72h-ZNF524_MA2096.1 9 bp overlap
ZNF549 1 dataset
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
ZNF652 1 dataset
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Zic3 1 dataset
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap