chr1 : 178,727,718 178,727,919
201 bp 74 TFs 2 linked genes
This 201 bp open chromatin element is linked to RALGPS2-AS1 and RALGPS2 and is bound by 74 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RALGPS2-AS1 1.4 kb Proximal Proximity
RALGPS2 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:178,722,718 – 178,732,919
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
AR 9 datasets
ChIP 22Rv1_Crispr_WT3 GSE123618.AR.22Rv1_Crispr_WT3 120 bp overlap
ChIP LNCaP_DHT24H GSE58428.AR.LNCaP_DHT24H 155 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 69 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 174 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 177 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 160 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 149 bp overlap
ChIP prostate_1853_T GSE130408.AR.prostate_1853_T 115 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 201 bp overlap
ATF1 3 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 201 bp overlap
ChIP K562 ENCFF817JQF 201 bp overlap
ChIP K562 ENCFF817JQF 201 bp overlap
ATF2 7 datasets
ChIP GM12878 ENCFF066HPG 87 bp overlap
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 195 bp overlap
ChIP HEK293 ENCFF194VKZ 91 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 131 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 90 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 167 bp overlap
ChIP K562 ENCFF139ZZG 145 bp overlap
ATF3 3 datasets
ChIP K-562 ENCSR632DCH.ATF3.K-562 201 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 105 bp overlap
ChIP K562 ENCFF921JQW 201 bp overlap
ATF7 4 datasets
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 147 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 191 bp overlap
ChIP K562 ENCFF308SKS 201 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 141 bp overlap
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 63 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 201 bp overlap
BRD4 3 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 201 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 166 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 201 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 201 bp overlap
CREB1 3 datasets
ChIP MCF-7 ENCFF341ZEM 52 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 97 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 125 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 201 bp overlap
E2F1 1 dataset
ChIP K-562 ENCSR720HUL.E2F1.K-562 85 bp overlap
EBF1 1 dataset
ChIP LCL GSE75503.EBF1.LCL 153 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 121 bp overlap
ESR1 3 datasets
ChIP ZR751 ERP000783.ESR1.ZR751 132 bp overlap
ChIP breast_tumor_Male_1 GSE104399.ESR1.breast_tumor_Male_1 201 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 180 bp overlap
FOXA1 26 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 172 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 159 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 130 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 55 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 158 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 201 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 156 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 53 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 95 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 154 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 201 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 201 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 133 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 201 bp overlap
ChIP breast_tumor_Female_3 GSE104399.FOXA1.breast_tumor_Female_3 60 bp overlap
ChIP breast_tumor_Male_1 GSE104399.FOXA1.breast_tumor_Male_1 201 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 177 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 201 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 176 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 201 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 201 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 131 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 115 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 201 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 127 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 112 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 85 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 201 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 118 bp overlap
ChIP DE DE-FOXA2-1 201 bp overlap
ChIP DE DE-FOXA2-2 201 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 69 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 201 bp overlap
FOXP1 1 dataset
ChIP U2932 ERP010999.FOXP1.U2932 201 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 145 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 201 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 147 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 201 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 199 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 164 bp overlap
ChIP erythroblast ENCFF867JAR 201 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 201 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 193 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 201 bp overlap
ChIP DE DE-GATA4-2 201 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 144 bp overlap
ChIP foregut GSE117136.GATA4.foregut 201 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 201 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 187 bp overlap
GATA6 11 datasets
ChIP AGS GSE51705.GATA6.AGS 137 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 125 bp overlap
ChIP DE DE-GATA6-1 201 bp overlap
ChIP DE DE-GATA6-2 201 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 201 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 201 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 201 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 201 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 201 bp overlap
ChIP foregut GSE117136.GATA6.foregut 201 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 201 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 142 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 118 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 193 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 201 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 201 bp overlap
MEN1 1 dataset
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 201 bp overlap
MYCN 1 dataset
ChIP 22Rv1_intact GSE117304.MYCN.22Rv1_intact 125 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 201 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 201 bp overlap
NEUROD1 4 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 201 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 158 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 162 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 201 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 142 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 201 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 132 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 133 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 201 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 201 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 76 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 201 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 201 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF554DMZ 145 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 121 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 164 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 201 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 201 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 103 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 165 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 160 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 201 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 64 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 51 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 92 bp overlap
TAL1 5 datasets
ChIP CD34 GSE52924.TAL1.CD34 114 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 153 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 169 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 185 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 136 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 117 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 198 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 103 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 140 bp overlap
ZBTB21 2 datasets
ChIP HEK293 ENCFF509WYZ 139 bp overlap
ChIP HEK293 ENCSR321MSF.ZBTB21.HEK293 98 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 201 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 201 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 201 bp overlap
ChIP HEK293 ENCFF847JIE 201 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 201 bp overlap
ZIC1 1 dataset
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 146 bp overlap
ZNF135 1 dataset
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 113 bp overlap
ZNF157 1 dataset
Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap
ZNF16 1 dataset
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 180 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 122 bp overlap
ChIP HEK293 ENCFF784SLD 138 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 201 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 201 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 126 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 117 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 201 bp overlap
ZNF670 1 dataset
ChIP HepG2 ENCFF684IKN 87 bp overlap
ZNF816 1 dataset
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap