chr9 : 86,053,821 – 86,054,403

582 bp 62 TFs 0 linked genes

This 582 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

62 transcription factors

AR 3 datasets

ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 297 bp overlap

ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 291 bp overlap

ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 173 bp overlap

BRD3 1 dataset

ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 140 bp overlap

BRD4 5 datasets

ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 582 bp overlap

ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 576 bp overlap

ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 582 bp overlap

ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 104 bp overlap

ChIP MV4-11_IBET151_5000nM GSE120715.BRD4.MV4-11_IBET151_5000nM 131 bp overlap

CRY1 1 dataset

ChIP U2OS GSE44236.CRY1.U2OS 53 bp overlap

CTCF 1 dataset

ChIP GSC23 GSE139416.CTCF.GSC23 293 bp overlap

CUX1 1 dataset

ChIP Hep-G2 ENCSR049KIZ.CUX1.Hep-G2 230 bp overlap

DDX5 1 dataset

ChIP NTERA2 GSE58641.DDX5.NTERA2 235 bp overlap

DEK 1 dataset

ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 65 bp overlap

EED 1 dataset

ChIP ProEs GSE59087.EED.ProEs 169 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 206 bp overlap

ERG 1 dataset

ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 139 bp overlap

ESR1 2 datasets

ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 84 bp overlap

ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 147 bp overlap

FOXA1 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 311 bp overlap

FOXA2 4 datasets

ChIP DE DE-FOXA2-1 582 bp overlap

ChIP DE DE-FOXA2-2 582 bp overlap

ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 352 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 234 bp overlap

FOXB1 2 datasets

Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap

Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap

FOXC1 2 datasets

Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap

Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap

FOXC2 2 datasets

Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap

Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap

FOXO6 2 datasets

Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap

Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 439 bp overlap

ChIP DE DE-GATA4-2 492 bp overlap

ChIP foregut GSE117136.GATA4.foregut 286 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 501 bp overlap

ChIP DE DE-GATA6-2 518 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 281 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 298 bp overlap

ChIP foregut GSE117136.GATA6.foregut 344 bp overlap

GSPT2 1 dataset

ChIP HEK293T GSE35197.GSPT2.HEK293T 138 bp overlap

HIF3A 1 dataset

ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 295 bp overlap

HNF4A 1 dataset

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 160 bp overlap

IRF1 1 dataset

ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 60 bp overlap

MED1 2 datasets

ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 239 bp overlap

ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 184 bp overlap

NFE2 1 dataset

ChIP erythroid_R3R4 GSE43625.NFE2.erythroid_R3R4 53 bp overlap

NIPBL 1 dataset

ChIP GP5D GSE51234.NIPBL.GP5D 88 bp overlap

NONO 1 dataset

ChIP MCF-7 ENCSR912NMR.NONO.MCF-7 208 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BHE.NR3C1.A-549 81 bp overlap

Nr2e1 2 datasets

Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap

Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap

PARP1 1 dataset

ChIP MCF-10A GSE93038.PARP1.MCF-10A 156 bp overlap

PGR 3 datasets

ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 258 bp overlap

ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 287 bp overlap

ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 214 bp overlap

PPARG 1 dataset

ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 123 bp overlap

RARA 1 dataset

ChIP HepG2 ENCFF582XUA 352 bp overlap

RBPJ 2 datasets

Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap

Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap

RCOR1 1 dataset

ChIP MCF-7 ENCSR391JII.RCOR1.MCF-7 324 bp overlap

RELA 3 datasets

Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap

Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap

ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 51 bp overlap

RXR 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 264 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 153 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 442 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 271 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 207 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 198 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 238 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 447 bp overlap

SSRP1 1 dataset

ChIP HT-1080_CBL0100 GSE107595.SSRP1.HT-1080_CBL0100 168 bp overlap

STAT1 2 datasets

Motif DE_48h DE_48h-STAT1_MA0137.4 9 bp overlap

Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap

STAT3 2 datasets

Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap

Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap

SUPT6H 1 dataset

ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 251 bp overlap

SUZ12 1 dataset

ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 275 bp overlap

Stat4 2 datasets

Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap

Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap

Stat5b 2 datasets

Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap

Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap

TARDBP 2 datasets

ChIP K-562 GSE120104.TARDBP.K-562 146 bp overlap

ChIP K-562 ENCSR429XTR.TARDBP.K-562 113 bp overlap

YY1 1 dataset

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap

ZKSCAN1 1 dataset

ChIP MCF-7 ENCSR449UFF.ZKSCAN1.MCF-7 164 bp overlap

ZNF143 2 datasets

ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 62 bp overlap

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 52 bp overlap

ZNF410 1 dataset

ChIP K-562 GSE97661.ZNF410.K-562 109 bp overlap

ZNF479 1 dataset

ChIP HEK293T GSE78099.ZNF479.HEK293T 135 bp overlap

ZNF644 1 dataset

ChIP HEK293T GSE62616.ZNF644.HEK293T 51 bp overlap

ZNF75A 1 dataset

Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap

ZNF75D 1 dataset

Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap

Zfp809 2 datasets

Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap

Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap