chr1 : 175,922,238 175,922,917
679 bp 74 TFs 3 linked genes
This 679 bp open chromatin element is linked to LINC02803, COP1, and COP1-DT and is bound by 74 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
LINC02803 1.2 kb Proximal Proximity
COP1 284.0 kb Distal Multiome
COP1-DT 285.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:175,917,238 – 175,927,917
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 628 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 487 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 531 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
BCL11A 2 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 139 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 144 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 124 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 76 bp overlap
Crx 1 dataset
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 143 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 337 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 194 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 315 bp overlap
GATA4 1 dataset
Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap
GCM1 2 datasets
Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap
Motif ES_0h ES_0h-GCM1_MA0646.2 10 bp overlap
GSC 1 dataset
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
IRF5 1 dataset
Motif ES_0h ES_0h-IRF5_MA1420.1 14 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Isl1 1 dataset
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 403 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 327 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 369 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 422 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 536 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 558 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 507 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 128 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 100 bp overlap
ChIP H1 ENCFF914VQY 216 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 290 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 220 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 1 dataset
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
MXI1 2 datasets
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 238 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 664 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 386 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 207 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 596 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 505 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 387 bp overlap
ChIP hESC GSE18292.NANOG.hESC 103 bp overlap
NIPBL 1 dataset
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 193 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
OTX1 1 dataset
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 167 bp overlap
PITX1 1 dataset
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif ES_0h ES_0h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
PLAG1 1 dataset
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 631 bp overlap
POU5F1 8 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 500 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 365 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 267 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 216 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 235 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 472 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 327 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 167 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 578 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 344 bp overlap
RHOXF1 1 dataset
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 303 bp overlap
RREB1 1 dataset
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
SIX2 1 dataset
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 377 bp overlap
SIX5 2 datasets
ChIP H1 ENCFF942SOJ 237 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 135 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 310 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 400 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 472 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 560 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 276 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 519 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 404 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 612 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 301 bp overlap
SP1 3 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 356 bp overlap
SP4 2 datasets
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 135 bp overlap
SP5 2 datasets
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 225 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 146 bp overlap
Six3 1 dataset
Motif ES_0h ES_0h-Six3_MA0631.2 11 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 335 bp overlap
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 179 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 134 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 297 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 272 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 58 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 246 bp overlap
USF1 5 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 163 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 327 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 129 bp overlap
ChIP WTC11 ENCFF699QGS 330 bp overlap
USF2 3 datasets
ChIP H1 ENCFF434EDF 234 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 187 bp overlap
ChIP WTC11 ENCFF139JAW 155 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 261 bp overlap
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 254 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 229 bp overlap
ChIP K562 ENCFF281INV 277 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap