chr9 : 20,023,652 20,025,036
1,384 bp 98 TFs 0 linked genes
This 1.4 kb open chromatin element has no linked target genes and is bound by 98 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:20,018,652 – 20,030,036
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 138 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 137 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 285 bp overlap
Alx4 1 dataset
Motif DE_72h DE_72h-Alx4_MA0853.2 12 bp overlap
Arid3b 1 dataset
Motif DE_72h DE_72h-Arid3b_MA0601.2 7 bp overlap
Arid5a 1 dataset
Motif DE_72h DE_72h-Arid5a_MA0602.2 8 bp overlap
Arx 1 dataset
Motif DE_72h DE_72h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BRD4 1 dataset
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
BSX 1 dataset
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 262 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 255 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 324 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 441 bp overlap
CTCF 1 dataset
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 329 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 201 bp overlap
DLX1 1 dataset
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Dlx3 1 dataset
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
EN2 1 dataset
Motif DE_72h DE_72h-EN2_MA0642.3 7 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 194 bp overlap
ChIP hESC GSE26097.EOMES.hESC 187 bp overlap
EP300 1 dataset
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 220 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 123 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 170 bp overlap
FOXA1 2 datasets
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 194 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 240 bp overlap
ChIP DE DE-FOXA2-1 1195 bp overlap
ChIP DE DE-FOXA2-2 1138 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_72h DE_72h-FOXS1_MA2118.1 8 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 134 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 189 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 1172 bp overlap
ChIP DE DE-GATA4-2 1192 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 174 bp overlap
ChIP foregut GSE117136.GATA4.foregut 562 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 73 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 598 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 494 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 153 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 202 bp overlap
ChIP DE DE-GATA6-1 459 bp overlap
ChIP DE DE-GATA6-1 712 bp overlap
ChIP DE DE-GATA6-2 1172 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 1150 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1038 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 845 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 631 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1095 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 1177 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 281 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 415 bp overlap
ChIP foregut GSE117136.GATA6.foregut 460 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 562 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 420 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 351 bp overlap
GBX1 1 dataset
Motif DE_72h DE_72h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 2 datasets
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 241 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 211 bp overlap
HESX1 1 dataset
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HNF1A 1 dataset
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_72h DE_72h-HNF1B_MA0153.2 13 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 104 bp overlap
HOXA7 1 dataset
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 109 bp overlap
Hmga1 1 dataset
Motif DE_72h DE_72h-Hmga1_MA2124.1 8 bp overlap
Hmx1 1 dataset
Motif DE_72h DE_72h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_72h DE_72h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_72h DE_72h-Hmx3_MA0898.2 9 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 539 bp overlap
LBX1 1 dataset
Motif DE_72h DE_72h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_72h DE_72h-LHX9_MA0701.3 7 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 289 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 271 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_72h DE_72h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_72h DE_72h-MEIS3_MA0775.2 7 bp overlap
MSX1 1 dataset
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 260 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 237 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Msx3 1 dataset
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_alpha-amanitin-30min GSE118494.NCAPH2.IMR-90_alpha-amanitin-30min 283 bp overlap
NEUROD1 7 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 281 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 229 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 196 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 172 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 254 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 199 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 213 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 139 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 249 bp overlap
NR3C1 1 dataset
ChIP IMR-90 ERP007093.NR3C1.IMR-90 141 bp overlap
Nkx3-2 1 dataset
Motif DE_72h DE_72h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 383 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 228 bp overlap
PDX1 6 datasets
ChIP H9 ERP004206.PDX1.H9 192 bp overlap
ChIP hESC GSE58685.PDX1.hESC 205 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 704 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 839 bp overlap
ChIP islet ERP001456.PDX1.islet 183 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 784 bp overlap
PHOX2A 2 datasets
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 223 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCFF589FCY 62 bp overlap
POU4F1 1 dataset
Motif DE_72h DE_72h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_72h DE_72h-POU4F2_MA0683.2 15 bp overlap
Motif DE_72h DE_72h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_72h DE_72h-POU4F3_MA0791.2 12 bp overlap
POU5F1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 155 bp overlap
PROP1 2 datasets
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
PRRX2 1 dataset
Motif DE_72h DE_72h-PRRX2_MA0075.4 7 bp overlap
Pax7 1 dataset
Motif DE_72h DE_72h-Pax7_MA0680.3 10 bp overlap
RARA 3 datasets
Motif DE_72h DE_72h-RARA_MA0729.1 18 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 563 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 228 bp overlap
RAX 1 dataset
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 398 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RNF2 2 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 289 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 289 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 342 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 507 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 847 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 316 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 548 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 489 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 338 bp overlap
SS18 4 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 635 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 1088 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 307 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 354 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
USP7 1 dataset
ChIP HEK293T GSE61048.USP7.HEK293T 197 bp overlap
VENTX 1 dataset
Motif DE_72h DE_72h-VENTX_MA0724.1 9 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 184 bp overlap
ZNF547 1 dataset
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap