chr9 : 4,050,722 – 4,051,434
712 bp 91 TFs 0 linked genes
This 712 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:4,045,722 – 4,056,434
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
ARNT::HIF1A 2 datasets
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_72h DE_72h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 2 datasets
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 659 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 307 bp overlap
BRD4 2 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 380 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 654 bp overlap
Bcl11B 1 dataset
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
CEBPA 1 dataset
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 307 bp overlap
EOMES 3 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 224 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D26 GSE139377.ERG.aortic-endothelial-cell_D26 140 bp overlap
ETV2::HOXB13 1 dataset
Motif DE_60h DE_60h-ETV2HOXB13_MA1943.2 13 bp overlap
FIGLA 4 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 486 bp overlap
ChIP DE DE-FOXA2-2 555 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXD3 2 datasets
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 468 bp overlap
ChIP DE DE-GATA4-2 592 bp overlap
ChIP foregut GSE117136.GATA4.foregut 426 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 535 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 525 bp overlap
ChIP DE DE-GATA6-2 624 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 375 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 261 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 312 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 395 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 407 bp overlap
ChIP foregut GSE117136.GATA6.foregut 388 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
KLF10 1 dataset
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Lhx3 1 dataset
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MAZ 1 dataset
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_60h DE_60h-MEIS2_MA1640.2 9 bp overlap
MGA 2 datasets
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 209 bp overlap
MYB 2 datasets
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
PBX2 1 dataset
Motif DE_60h DE_60h-PBX2_MA1113.3 9 bp overlap
PPARA::RXRA 1 dataset
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 2 datasets
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 275 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 313 bp overlap
RORA 2 datasets
Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap
Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap
RORB 1 dataset
Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_60h DE_60h-RORC_MA1151.2 10 bp overlap
SIX1 2 datasets
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
Motif DE_72h DE_72h-SIX1_MA1118.2 9 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 374 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 237 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 344 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 148 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 703 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 534 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 346 bp overlap
SNAI1 2 datasets
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SNAI3 2 datasets
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 565 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 260 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 286 bp overlap
SP1 1 dataset
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Six4 2 datasets
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
Motif DE_72h DE_72h-Six4_MA2001.2 7 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Stat6 1 dataset
Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBR1 2 datasets
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX19 2 datasets
Motif DE_60h DE_60h-TBX19_MA0804.2 17 bp overlap
Motif DE_72h DE_72h-TBX19_MA0804.2 17 bp overlap
TBX2 2 datasets
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TBXT 2 datasets
Motif DE_60h DE_60h-TBXT_MA0009.2 16 bp overlap
Motif DE_72h DE_72h-TBXT_MA0009.2 16 bp overlap
TCF12 2 datasets
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TCF4 2 datasets
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tbx6 2 datasets
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
Yy1 1 dataset
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
ZEB1 4 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF148 1 dataset
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
ZNF184 2 datasets
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap
ZNF281 1 dataset
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
ZNF558 2 datasets
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF75D 2 datasets
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
ZNF768 2 datasets
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
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