chr9 : 3,886,315 3,887,475
1,160 bp 105 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 105 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:3,881,315 – 3,892,475
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ARGFX 1 dataset
Motif DE_48h DE_48h-ARGFX_MA1463.2 8 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 633 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 391 bp overlap
Alx4 1 dataset
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 514 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 562 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BRD4 5 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 460 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 229 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 718 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 234 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 177 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CTCF 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 197 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DMRTA1 2 datasets
Motif DE_48h DE_48h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_60h DE_60h-DMRTA1_MA1707.2 10 bp overlap
DPRX 1 dataset
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
Dlx2 1 dataset
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 286 bp overlap
ChIP hESC GSE26097.EOMES.hESC 245 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 563 bp overlap
ChIP neural cell ENCFF442QNK 476 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 145 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 205 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 205 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 93 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 118 bp overlap
FOXA1 3 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 256 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 222 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 211 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 543 bp overlap
ChIP DE DE-FOXA2-1 404 bp overlap
ChIP DE DE-FOXA2-2 559 bp overlap
ChIP DE DE-FOXA2-2 530 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 272 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 2 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 1113 bp overlap
ChIP DE DE-GATA4-2 1085 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 307 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 448 bp overlap
ChIP DE DE-GATA6-1 511 bp overlap
ChIP DE DE-GATA6-2 1127 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 294 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 592 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 393 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 365 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 334 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 417 bp overlap
ChIP foregut GSE117136.GATA6.foregut 301 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 158 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA4 2 datasets
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 231 bp overlap
HOXB4 4 datasets
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 4 datasets
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 4 datasets
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
IRF2 4 datasets
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
IRF3 2 datasets
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
JUND 2 datasets
Motif DE_48h DE_48h-JUND_MA0492.2 11 bp overlap
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 296 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
Lhx1 1 dataset
Motif DE_48h DE_48h-Lhx1_MA1518.3 10 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 319 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 476 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 371 bp overlap
MEF2B 1 dataset
Motif DE_60h DE_60h-MEF2B_MA0660.1 12 bp overlap
MEIS1 6 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MXI1 3 datasets
ChIP neural ENCSR934NHU.MXI1.neural 318 bp overlap
ChIP neural cell ENCFF623HQN 442 bp overlap
ChIP neural cell ENCFF623HQN 243 bp overlap
MYB 3 datasets
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 235 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 340 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 275 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 369 bp overlap
NR1D1 1 dataset
Motif DE_48h DE_48h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_48h DE_48h-NR1D2_MA1532.2 15 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PAX5 5 datasets
ChIP DOHH2 GSE69558.PAX5.DOHH2 192 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 207 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 215 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 223 bp overlap
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 721 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 182 bp overlap
PBX3 1 dataset
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 357 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 234 bp overlap
PKNOX1 1 dataset
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
PKNOX2 1 dataset
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 365 bp overlap
POU2F3 2 datasets
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 165 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 383 bp overlap
POU6F1 2 datasets
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 238 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 485 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
REST 2 datasets
ChIP hippocampus GSE144226.REST.hippocampus 245 bp overlap
ChIP neural ENCSR000BTV.REST.neural 579 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 56 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 87 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 195 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 356 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 572 bp overlap
SMAD2_3 4 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 382 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 711 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 401 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 415 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 179 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 224 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 357 bp overlap
ChIP neural cell ENCFF795YGY 405 bp overlap
ChIP neural cell ENCFF795YGY 83 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 272 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 385 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 367 bp overlap
SRY 2 datasets
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
STAT1::STAT2 2 datasets
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
TP53 1 dataset
Motif DE_48h DE_48h-TP53_MA0106.3 18 bp overlap
TP63 6 datasets
Motif DE_48h DE_48h-TP63_MA0525.2 18 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 283 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 290 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 235 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 309 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 222 bp overlap
TP73 1 dataset
Motif DE_48h DE_48h-TP73_MA0861.2 16 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 267 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 236 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 182 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 294 bp overlap
ZNF582 1 dataset
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZSCAN29 1 dataset
Motif DE_60h DE_60h-ZSCAN29_MA1602.2 11 bp overlap
Zfx 1 dataset
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap