chr1 : 162,890,170 162,890,375
205 bp 75 TFs 0 linked genes
This 205 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:162,885,170 – 162,895,375
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 182 bp overlap
ARNTL 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR949COJ.ARNTL.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 69 bp overlap
ATRX 3 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 205 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 205 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 205 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
BRD4 5 datasets
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 205 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 205 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 120 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 205 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 113 bp overlap
CDK9 1 dataset
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 148 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 198 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 205 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 142 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 151 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 197 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 127 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF451CNG 126 bp overlap
ChIP SK-N-SH ENCFF829RWA 205 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 205 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 115 bp overlap
ESRRG 3 datasets
ChIP SK-N-SH ENCFF394HLU 131 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 205 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 205 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 198 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 205 bp overlap
ChIP SK-N-SH ENCFF764OZD 167 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 205 bp overlap
GATA3 9 datasets
ChIP BE2C GSE65664.GATA3.BE2C 185 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 178 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 205 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 205 bp overlap
ChIP SH-SY5Y ENCFF475HYF 205 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 169 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 205 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 190 bp overlap
ChIP SK-N-SH ENCFF040SSB 114 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 205 bp overlap
ChIP DE DE-GATA4-2 205 bp overlap
ChIP G296S GSE85628.GATA4.G296S 118 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 118 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 184 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 185 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 205 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 168 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 205 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 184 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 205 bp overlap
ChIP DE DE-GATA6-2 205 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 205 bp overlap
ChIP foregut GSE117136.GATA6.foregut 205 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 205 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 205 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 138 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 142 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 205 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 205 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 205 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 152 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 61 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 205 bp overlap
ChIP SK-N-SH ENCFF285GEQ 205 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 205 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 205 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 205 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 156 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 205 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 205 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 200 bp overlap
MYC 3 datasets
ChIP Kelly GSE138295.MYC.Kelly 205 bp overlap
ChIP MDA-MB-453_DHT GSE45201.MYC.MDA-MB-453_DHT 104 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 195 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 151 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 205 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 205 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 205 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 205 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 197 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 205 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 205 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 151 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 59 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 205 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 135 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 203 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 162 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 205 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 199 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 158 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 103 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 83 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 187 bp overlap
PDX1 2 datasets
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 143 bp overlap
ChIP islet ERP001456.PDX1.islet 126 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 205 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 156 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 205 bp overlap
POLR2A 2 datasets
ChIP SK-N-SH ENCFF683PFH 86 bp overlap
ChIP stomach ENCFF820WZN 185 bp overlap
POU6F1 1 dataset
ChIP SK-N-SH ENCFF834EMP 112 bp overlap
RAD21 5 datasets
ChIP SK-N-SH ENCFF747MAS 205 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 205 bp overlap
ChIP SK-N-SH GSE76815.RAD21.SK-N-SH 168 bp overlap
ChIP liver ENCFF522JHE 205 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 204 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 184 bp overlap
RARB 1 dataset
ChIP SK-N-SH ENCFF475WOR 205 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 162 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 205 bp overlap
REST 2 datasets
ChIP SK-N-SH ENCFF861MKH 196 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 205 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 205 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 205 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 205 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 205 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 205 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 149 bp overlap
SMC3 1 dataset
ChIP SK-N-SH ENCFF791WFB 169 bp overlap
SNAI2 3 datasets
ChIP SK-N-SH ENCFF449PID 120 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 144 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 205 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 87 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 90 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 205 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 205 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 200 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 136 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 205 bp overlap
ChIP SK-N-SH ENCFF270OWF 205 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 205 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 205 bp overlap
ChIP SK-N-SH ENCFF754TJT 137 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 162 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 180 bp overlap
TOX 1 dataset
ChIP SK-N-SH ENCFF977TQV 63 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 112 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 106 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 100 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 205 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 205 bp overlap
XRCC5 1 dataset
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 152 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 205 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 205 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
ZFP30 1 dataset
ChIP SK-N-SH ENCFF375XBD 139 bp overlap
ZNF565 1 dataset
ChIP SK-N-SH ENCFF372UGG 205 bp overlap
ZNF608 2 datasets
ChIP SK-N-SH ENCFF518LYG 140 bp overlap
ChIP SK-N-SH ENCFF518LYG 205 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 205 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 187 bp overlap