chr1 : 162,443,805 162,444,309
504 bp 88 TFs 2 linked genes
This 504 bp open chromatin element is linked to UHMK1 and UAP1 and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
UHMK1 53.8 kb Distal Multiome
UAP1 117.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:162,438,805 – 162,449,309
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 432 bp overlap
ARNT2 1 dataset
Motif DE_72h DE_72h-ARNT2_MA1464.2 8 bp overlap
ATF4 1 dataset
Motif DE_72h DE_72h-ATF4_MA0833.3 10 bp overlap
Arnt 1 dataset
Motif DE_72h DE_72h-Arnt_MA0004.1 6 bp overlap
BARX1 1 dataset
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CEBPB 1 dataset
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 157 bp overlap
CEBPG 1 dataset
Motif DE_72h DE_72h-CEBPG_MA1636.2 10 bp overlap
CLOCK 1 dataset
Motif DE_72h DE_72h-CLOCK_MA0819.3 7 bp overlap
CTCF 1 dataset
ChIP astrocyte ENCFF558APA 129 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EN2 1 dataset
Motif DE_72h DE_72h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 204 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 223 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 467 bp overlap
ChIP DE DE-FOXA2-2 472 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 504 bp overlap
ChIP DE DE-GATA4-2 504 bp overlap
ChIP foregut GSE117136.GATA4.foregut 259 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 482 bp overlap
ChIP DE DE-GATA6-2 504 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 383 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 491 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 393 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 398 bp overlap
GBX1 1 dataset
Motif DE_72h DE_72h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
GLIS3 1 dataset
Motif DE_72h DE_72h-GLIS3_MA0737.1 14 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HES6 1 dataset
Motif DE_72h DE_72h-HES6_MA1493.1 10 bp overlap
HESX1 1 dataset
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 165 bp overlap
JUN 1 dataset
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
LBX1 1 dataset
Motif DE_72h DE_72h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_72h DE_72h-LHX9_MA0701.3 7 bp overlap
MAX 2 datasets
Motif DE_72h DE_72h-MAX_MA0058.4 6 bp overlap
ChIP K562 ENCFF524IJO 397 bp overlap
MLXIPL 1 dataset
Motif DE_72h DE_72h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_72h DE_72h-MNT_MA0825.2 6 bp overlap
MSX1 1 dataset
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
MYC 2 datasets
Motif DE_72h DE_72h-MYC_MA0147.4 8 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
MYCN 1 dataset
Motif DE_72h DE_72h-MYCN_MA0104.5 8 bp overlap
MZF1 1 dataset
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Mlxip 1 dataset
Motif DE_72h DE_72h-Mlxip_MA0622.2 6 bp overlap
Msx3 1 dataset
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
Npas2 1 dataset
Motif DE_72h DE_72h-Npas2_MA0626.2 8 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PRRX2 1 dataset
Motif DE_72h DE_72h-PRRX2_MA0075.4 7 bp overlap
RARA 1 dataset
Motif DE_72h DE_72h-RARA_MA0729.1 18 bp overlap
RAX 1 dataset
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORA 1 dataset
Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap
SCRT1 1 dataset
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SIX2 1 dataset
Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 403 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 409 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 379 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 405 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 411 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPI1 3 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 166 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 163 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Stat2 1 dataset
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 275 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 53 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 175 bp overlap
ChIP K562 ENCFF281INV 187 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCFF799ATK 194 bp overlap
ZNF449 1 dataset
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 177 bp overlap
ChIP K562 ENCFF601EMZ 302 bp overlap
ChIP K562 ENCFF601EMZ 79 bp overlap
ZNF740 1 dataset
Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap
ZNF766 1 dataset
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 185 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 271 bp overlap