chr7 : 139,971,936 139,972,384
448 bp 102 TFs 4 linked genes
This 448 bp open chromatin element is linked to 4 target genes and is bound by 102 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
PARP12 90.8 kb Distal Multiome
TBXAS1 194.1 kb Distal Multiome
HIPK2 194.2 kb Distal Multiome
KDM7A 204.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:139,966,936 – 139,977,384
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
Arid3b 1 dataset
Motif ES_0h ES_0h-Arid3b_MA0601.2 7 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCL6B 2 datasets
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 192 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 448 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 109 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 176 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 262 bp overlap
CTCF 6 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 177 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 162 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 245 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 221 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 196 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 164 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 82 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 428 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA1 24 datasets
ChIP MCF-7 GSE140185.FOXA1.MCF-7 222 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 173 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 168 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 110 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 118 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.FOXA1.MCF-7_ARID1A-KO 164 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 177 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 189 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 144 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 164 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 133 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 172 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 260 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 193 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 279 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 199 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 245 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 169 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 192 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 145 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 131 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 156 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 160 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 167 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 130 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 251 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HOXA6 1 dataset
Motif ES_0h ES_0h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif ES_0h ES_0h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif ES_0h ES_0h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif ES_0h ES_0h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif ES_0h ES_0h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 304 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 246 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 99 bp overlap
KLF5 2 datasets
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 359 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAZ 2 datasets
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 263 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 77 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 202 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 299 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 126 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 343 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 277 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 98 bp overlap
ChIP hESC GSE20650.NANOG.hESC 168 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 297 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 232 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 246 bp overlap
POU5F1 6 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 349 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 448 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 277 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 123 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 198 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 149 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 232 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 137 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 127 bp overlap
RBFOX2 5 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 240 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 219 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 128 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 101 bp overlap
ChIP K562 ENCFF967GRF 209 bp overlap
RBPJ 1 dataset
ChIP MUTUL GSE75503.RBPJ.MUTUL 300 bp overlap
RUNX1 1 dataset
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 221 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 278 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 124 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 237 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 189 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 416 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 254 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 345 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 397 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 255 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 322 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI2 2 datasets
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 215 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 229 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 309 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 212 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TCF12 1 dataset
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 227 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 275 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 154 bp overlap
VENTX 1 dataset
Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 296 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 157 bp overlap
ZNF331 1 dataset
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 308 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 448 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 185 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 218 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap