chr1 : 100,950,765 – 100,951,198

433 bp 100 TFs 0 linked genes

This 433 bp open chromatin element has no linked target genes and is bound by 100 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

100 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 433 bp overlap

ASXL3 1 dataset

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 408 bp overlap

Alx1 1 dataset

Motif DE_36h DE_36h-Alx1_MA0854.2 8 bp overlap

Alx4 1 dataset

Motif DE_36h DE_36h-Alx4_MA0853.2 12 bp overlap

Arx 1 dataset

Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap

BACH1 1 dataset

ChIP WA01 ENCSR000EBQ.BACH1.WA01 187 bp overlap

BARX1 1 dataset

Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap

BRD4 7 datasets

ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 106 bp overlap

ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 137 bp overlap

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 343 bp overlap

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 433 bp overlap

ChIP RH4 GSE83726.BRD4.RH4 411 bp overlap

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 392 bp overlap

ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 366 bp overlap

BSX 1 dataset

Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap

Bach1::Mafk 1 dataset

Motif DE_36h DE_36h-Bach1Mafk_MA0591.2 12 bp overlap

CASZ1 2 datasets

ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 340 bp overlap

ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 386 bp overlap

CDK6 1 dataset

ChIP KB_IL GSE52469.CDK6.KB_IL 68 bp overlap

CHD4 2 datasets

ChIP RH5 GSE155861.CHD4.RH5 220 bp overlap

ChIP SCMC GSE155861.CHD4.SCMC 383 bp overlap

CSNK2A1 1 dataset

ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 148 bp overlap

CTCF 2 datasets

ChIP RH4 GSE83726.CTCF.RH4 165 bp overlap

ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 234 bp overlap

DLX1 1 dataset

Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap

DUXA 1 dataset

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

Dlx3 1 dataset

Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap

EGR2 1 dataset

Motif DE_36h DE_36h-EGR2_MA0472.2 11 bp overlap

ESR1 1 dataset

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 304 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOSL2 1 dataset

ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 433 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 393 bp overlap

GATA6 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 367 bp overlap

GBX2 1 dataset

Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap

HDAC2 2 datasets

ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 329 bp overlap

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 433 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 406 bp overlap

HESX1 1 dataset

Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap

HMBOX1 2 datasets

ChIP K-562 ENCSR757IIU.HMBOX1.K-562 131 bp overlap

ChIP K562 ENCFF317JJX 301 bp overlap

HOXA7 1 dataset

Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap

Hmx1 1 dataset

Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap

Hmx3 1 dataset

Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap

IRF9 1 dataset

Motif DE_36h DE_36h-IRF9_MA0653.1 15 bp overlap

JUND 1 dataset

ChIP WA01 ENCSR000EBZ.JUND.WA01 136 bp overlap

KDM1A 1 dataset

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 284 bp overlap

LBX2 1 dataset

Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap

MAF::NFE2 1 dataset

Motif DE_36h DE_36h-MAFNFE2_MA0501.2 11 bp overlap

MAFF 1 dataset

Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_36h DE_36h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAFK 2 datasets

Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap

ChIP WA01 ENCSR000EBS.MAFK.WA01 151 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap

MAZ 1 dataset

Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap

MED1 1 dataset

ChIP RH4 GSE83726.MED1.RH4 353 bp overlap

MEIS1 1 dataset

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif DE_36h DE_36h-MEIS2_MA1640.2 9 bp overlap

MRTFB 1 dataset

ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 279 bp overlap

MSX1 1 dataset

Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 404 bp overlap

MYC 1 dataset

ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap

MYCN 1 dataset

ChIP RH4 GSE83726.MYCN.RH4 332 bp overlap

MYOD1 7 datasets

ChIP RD GSE137168.MYOD1.RD 406 bp overlap

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 421 bp overlap

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 430 bp overlap

ChIP RH4 GSE83726.MYOD1.RH4 315 bp overlap

ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 314 bp overlap

ChIP myoblast GSE50413.MYOD1.myoblast 186 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 228 bp overlap

MYOG 3 datasets

ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 261 bp overlap

ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 353 bp overlap

ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 337 bp overlap

MZF1 2 datasets

ChIP HEK293 ENCFF683ZWN 134 bp overlap

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 371 bp overlap

Mafb 1 dataset

Motif DE_36h DE_36h-Mafb_MA0117.3 11 bp overlap

Msx3 1 dataset

Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap

Nfe2l2 1 dataset

Motif DE_36h DE_36h-Nfe2l2_MA0150.3 11 bp overlap

Nobox 1 dataset

Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap

OSR2 1 dataset

ChIP HEK293 GSE76494.OSR2.HEK293 164 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 283 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 226 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PKNOX1 1 dataset

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 250 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 189 bp overlap

PRDM9 1 dataset

Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap

PROP1 1 dataset

Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap

RAD21 1 dataset

ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 77 bp overlap

RAX 1 dataset

Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap

RBBP4 2 datasets

ChIP RH5 GSE155861.RBBP4.RH5 300 bp overlap

ChIP SCMC GSE155861.RBBP4.SCMC 382 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 210 bp overlap

RFX4 1 dataset

Motif DE_36h DE_36h-RFX4_MA0799.3 13 bp overlap

SCRT1 1 dataset

Motif DE_36h DE_36h-SCRT1_MA0743.3 10 bp overlap

SCRT2 2 datasets

Motif DE_36h DE_36h-SCRT2_MA0744.3 10 bp overlap

ChIP HEK293 ENCFF711QQB 357 bp overlap

SIX1 1 dataset

Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap

SIX2 4 datasets

Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap

ChIP HEK GSE73865.SIX2.HEK 432 bp overlap

ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 422 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 410 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 250 bp overlap

SMARCA2 3 datasets

ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 327 bp overlap

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 433 bp overlap

ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 293 bp overlap

SMARCA4 7 datasets

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 433 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 264 bp overlap

ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 343 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 268 bp overlap

ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 219 bp overlap

ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 433 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 272 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 342 bp overlap

SMARCC1 3 datasets

ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 256 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 433 bp overlap

ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 337 bp overlap

SNAI2 3 datasets

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 195 bp overlap

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 98 bp overlap

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap

SOX8 2 datasets

ChIP RH4 GSE116344.SOX8.RH4 257 bp overlap

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 252 bp overlap

SPIB 1 dataset

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 192 bp overlap

TAF1 1 dataset

ChIP WA01 ENCSR000BHO.TAF1.WA01 117 bp overlap

TBP 1 dataset

Motif DE_36h DE_36h-TBP_MA0108.3 7 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 159 bp overlap

Thap11 1 dataset

Motif DE_36h DE_36h-Thap11_MA1573.2 14 bp overlap

YY1 1 dataset

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 422 bp overlap

ZNF143 1 dataset

ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap

ZNF16 1 dataset

Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap

ZNF530 1 dataset

Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap

ZNF554 1 dataset

ChIP HEK293 GSE76494.ZNF554.HEK293 185 bp overlap

ZNF75A 1 dataset

Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap

ZNF823 1 dataset

ChIP HEK293T GSE78099.ZNF823.HEK293T 286 bp overlap

ZSCAN5C 1 dataset

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 195 bp overlap