chr5 : 137,181,399 137,182,120
721 bp 81 TFs 0 linked genes
This 721 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:137,176,399 – 137,187,120
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 266 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 163 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 615 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 482 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 298 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 618 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 444 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 365 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 532 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 552 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 474 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 532 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 494 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 240 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 243 bp overlap
DPRX 2 datasets
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
DUX4 2 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 292 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 348 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 562 bp overlap
ESR1 11 datasets
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 236 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 245 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 285 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 255 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 259 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 252 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 288 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 343 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 322 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 236 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 234 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 186 bp overlap
FOXA1 5 datasets
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 193 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 222 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 285 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 198 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 215 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 680 bp overlap
ChIP DE DE-FOXA2-2 721 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
ChIP SK-N-SH ENCFF124KVL 380 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 483 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 652 bp overlap
ChIP SK-N-SH ENCFF764OZD 343 bp overlap
ChIP SK-N-SH ENCFF764OZD 106 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 620 bp overlap
GATA3 13 datasets
ChIP BE2C GSE65664.GATA3.BE2C 552 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 524 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 568 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 496 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 233 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 146 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 213 bp overlap
ChIP NGP GSE65664.GATA3.NGP 381 bp overlap
ChIP SH-SY5Y ENCFF475HYF 339 bp overlap
ChIP SH-SY5Y ENCFF475HYF 350 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 594 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 398 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 656 bp overlap
ChIP DE DE-GATA4-2 721 bp overlap
ChIP foregut GSE117136.GATA4.foregut 425 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 253 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 587 bp overlap
ChIP DE DE-GATA6-2 673 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 465 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 440 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 368 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 502 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 501 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 505 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 383 bp overlap
ChIP foregut GSE117136.GATA6.foregut 347 bp overlap
GRHL2 1 dataset
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 716 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 721 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 244 bp overlap
Hnf1A 2 datasets
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IRF3 2 datasets
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
KDM1A 3 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 270 bp overlap
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 182 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 516 bp overlap
KDM1A_8A 1 dataset
ChIP SH-SY5Y_B3_SHCTR GSE58258.KDM1A_8A.SH-SY5Y_B3_SHCTR 287 bp overlap
LHX6 2 datasets
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
Lef1 2 datasets
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
Motif DE_72h DE_72h-Lef1_MA0768.3 8 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 469 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 403 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 463 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 432 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 491 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 228 bp overlap
MYC 2 datasets
ChIP Kelly GSE138295.MYC.Kelly 388 bp overlap
ChIP NB69 GSE138295.MYC.NB69 454 bp overlap
MYCN 10 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 248 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 652 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 583 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 181 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 112 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 600 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 568 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 511 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 469 bp overlap
ChIP NGP GSE80151.MYCN.NGP 260 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 414 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 342 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 467 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 306 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 460 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 431 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 546 bp overlap
PBX1 2 datasets
Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PHOX2A 2 datasets
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 582 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 721 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 441 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 305 bp overlap
POU3F4 2 datasets
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
Prdm4 1 dataset
Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap
RAD21 4 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 446 bp overlap
ChIP SK-N-SH GSE76815.RAD21.SK-N-SH 168 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 236 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 400 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 628 bp overlap
REST 2 datasets
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 280 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 538 bp overlap
SIX1 2 datasets
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
Motif DE_72h DE_72h-SIX1_MA1118.2 9 bp overlap
SIX2 2 datasets
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 315 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 644 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 334 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 492 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 339 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 266 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 348 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 412 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 616 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 658 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 330 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 520 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 323 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 231 bp overlap
Spz1 2 datasets
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 531 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 454 bp overlap
ChIP SK-N-SH ENCFF270OWF 255 bp overlap
TCF7L2 2 datasets
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 529 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 529 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 555 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 215 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 322 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 149 bp overlap
ZNF213 2 datasets
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF547 1 dataset
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
Zfp335 2 datasets
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Zfp809 2 datasets
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap