chr5 : 120,368,967 120,369,570
603 bp 73 TFs 0 linked genes
This 603 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:120,363,967 – 120,374,570
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 251 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 206 bp overlap
ASCL1 4 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 202 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 193 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 206 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 171 bp overlap
ATF3 3 datasets
ChIP liver ENCFF375GID 230 bp overlap
ChIP liver ENCFF867MFZ 234 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 138 bp overlap
BRCA1 1 dataset
ChIP MCF-10A GSE40591.BRCA1.MCF-10A 336 bp overlap
BRD4 7 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 603 bp overlap
ChIP HEK293_sgMYOD GSE129407.BRD4.HEK293_sgMYOD 328 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 198 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 199 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 181 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 290 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 180 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 304 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 255 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 112 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 140 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 209 bp overlap
CREB3 1 dataset
Motif DE_12h DE_12h-CREB3_MA0638.2 12 bp overlap
CREB3L4 1 dataset
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 243 bp overlap
CTCF 62 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 246 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 291 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 214 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 194 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 187 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 213 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 107 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 125 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 154 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 166 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 102 bp overlap
ChIP GM12878 ENCFF511URZ 194 bp overlap
ChIP GM12878 ENCFF635MMB 191 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 126 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 253 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 157 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 250 bp overlap
ChIP H54 ENCFF255TVO 112 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 177 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 109 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 133 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 159 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 179 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 96 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 208 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 269 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 241 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MM.1S ENCFF869JMQ 332 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 290 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 339 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 223 bp overlap
ChIP PC-3 ENCFF487TUI 334 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 209 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 134 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 274 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 173 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 154 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 129 bp overlap
ChIP body of pancreas ENCFF798MEO 159 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 133 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 315 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 138 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 351 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 173 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 157 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 235 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 142 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 231 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 174 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 153 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 73 bp overlap
ChIP BLaER1 ENCFF364PUR 238 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
ESR1 8 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 154 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 193 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 587 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 151 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 218 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 170 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 423 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 439 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 343 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 176 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 222 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 378 bp overlap
FOXA2 1 dataset
ChIP liver ENCFF877SFI 75 bp overlap
GATA6 1 dataset
ChIP PATU8988 GSE47535.GATA6.PATU8988 110 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 353 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 338 bp overlap
HNF4A 7 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 50 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 318 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 231 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 203 bp overlap
ChIP liver ENCFF354NRH 172 bp overlap
ChIP liver ENCFF449HPV 169 bp overlap
ChIP liver ERP002306.HNF4A.liver 148 bp overlap
HNF4G 1 dataset
ChIP liver ENCFF170YNZ 207 bp overlap
HOXC5 1 dataset
ChIP PC-3_Hoxc5overexp GSE97570.HOXC5.PC-3_Hoxc5overexp 197 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
IRF3 1 dataset
ChIP BC-3 GSE132777.IRF3.BC-3 187 bp overlap
IRF4 2 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 449 bp overlap
ChIP U266 GSE142493.IRF4.U266 548 bp overlap
JUND 2 datasets
ChIP liver ENCFF007WWT 247 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 129 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 154 bp overlap
MAX 1 dataset
ChIP Ishikawa ENCFF064TDQ 256 bp overlap
MED1 4 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 290 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 285 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 541 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 304 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 301 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 245 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 175 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 60 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 246 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 86 bp overlap
POLR2A 4 datasets
ChIP stomach ENCFF607ZPU 156 bp overlap
ChIP transverse colon ENCFF607LKE 214 bp overlap
ChIP transverse colon ENCFF610RWV 202 bp overlap
ChIP transverse colon ENCFF840PXT 81 bp overlap
PPARG 3 datasets
ChIP ESO-26 GSE143195.PPARG.ESO-26 223 bp overlap
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 214 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 175 bp overlap
RAD21 9 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 156 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 374 bp overlap
ChIP H1 ENCFF698EWO 227 bp overlap
ChIP H1 ENCFF967OJF 232 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
ChIP Ishikawa ENCFF570JVV 101 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 233 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 205 bp overlap
ChIP liver ENCFF485PAC 199 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RUNX1 2 datasets
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 350 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 299 bp overlap
RXR 2 datasets
ChIP LS180 GSE31939.RXR.LS180 132 bp overlap
ChIP LS180_125 GSE31939.RXR.LS180_125 138 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 268 bp overlap
ChIP liver ENCFF807CIA 168 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 94 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 504 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 121 bp overlap
ChIP liver ENCFF769YSM 123 bp overlap
STAT3 1 dataset
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 61 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 95 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 119 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 361 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TP53 1 dataset
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 126 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
XBP1 1 dataset
Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 94 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF680 2 datasets
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 117 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 114 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 209 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap