chr5 : 107,367,374 – 107,368,446

1,072 bp 97 TFs 0 linked genes

This 1.1 kb open chromatin element has no linked target genes and is bound by 97 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

97 transcription factors

BARHL1 1 dataset

Motif DE_36h DE_36h-BARHL1_MA0877.4 6 bp overlap

BARHL2 1 dataset

Motif DE_36h DE_36h-BARHL2_MA0635.2 6 bp overlap

BARX2 1 dataset

Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap

BCL11A 1 dataset

Motif DE_36h DE_36h-BCL11A_MA2324.1 7 bp overlap

CDX2 1 dataset

ChIP COLO-320 GSE30026.CDX2.COLO-320 102 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 827 bp overlap

CTCF 3 datasets

Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap

Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 320 bp overlap

CTCFL 1 dataset

Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap

CUX1 1 dataset

Motif DE_36h DE_36h-CUX1_MA0754.3 9 bp overlap

EBF1 1 dataset

Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap

EOMES 2 datasets

ChIP hESC GSE26097.EOMES.hESC 339 bp overlap

ChIP hESC GSE26097.EOMES.hESC 254 bp overlap

ESRRB 1 dataset

Motif DE_36h DE_36h-ESRRB_MA0141.4 10 bp overlap

ETV1 1 dataset

Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap

Ebf4 1 dataset

Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap

Esrrg 1 dataset

Motif DE_36h DE_36h-Esrrg_MA0643.2 9 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 188 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 186 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 558 bp overlap

ChIP DE DE-FOXA2-2 309 bp overlap

ChIP DE DE-FOXA2-2 520 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 356 bp overlap

ChIP DE DE-GATA4-1 602 bp overlap

ChIP DE DE-GATA4-2 1072 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 466 bp overlap

GATA6 16 datasets

ChIP DE DE-GATA6-1 349 bp overlap

ChIP DE DE-GATA6-1 587 bp overlap

ChIP DE DE-GATA6-2 1034 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 359 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 589 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 354 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 586 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 984 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 1072 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1052 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 1072 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1024 bp overlap

ChIP foregut GSE117136.GATA6.foregut 324 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 401 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 280 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 283 bp overlap

IKZF2 1 dataset

Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap

ISL2 1 dataset

Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap

Ikzf3 1 dataset

Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap

Isl1 1 dataset

Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap

JUN 2 datasets

ChIP DE_D2 S02-DE-d2-JUN-exp1 158 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 518 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 460 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 269 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 435 bp overlap

ChIP hESC GSE18292.NANOG.hESC 114 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_36h DE_36h-NR1H2RXRA_MA0115.1 17 bp overlap

NR2C1 1 dataset

Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap

NR2F2 1 dataset

Motif DE_36h DE_36h-NR2F2_MA1111.2 7 bp overlap

NR4A1 1 dataset

Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap

NR5A1 1 dataset

Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap

NR6A1 1 dataset

Motif DE_36h DE_36h-NR6A1_MA1541.2 14 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 228 bp overlap

Nr1H2 1 dataset

Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap

PAX3 1 dataset

Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

PLAG1 1 dataset

Motif DE_36h DE_36h-PLAG1_MA0163.1 14 bp overlap

POU2F1 1 dataset

Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap

POU3F4 1 dataset

Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap

POU5F1 2 datasets

ChIP BG03 GSE21614.POU5F1.BG03 174 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 288 bp overlap

POU5F1B 1 dataset

Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap

PPARA::RXRA 1 dataset

Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap

PPARD 1 dataset

Motif DE_36h DE_36h-PPARD_MA1550.2 14 bp overlap

PROP1 1 dataset

Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap

PSIP1 1 dataset

ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 141 bp overlap

Pax7 1 dataset

Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap

Ppara 1 dataset

Motif DE_36h DE_36h-Ppara_MA2338.1 7 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 202 bp overlap

RARB 1 dataset

Motif DE_36h DE_36h-RARB_MA1552.2 13 bp overlap

RARG 1 dataset

Motif DE_36h DE_36h-RARG_MA1553.2 13 bp overlap

RXRB 2 datasets

Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap

Motif DE_36h DE_36h-RXRB_MA1555.1 14 bp overlap

RXRG 1 dataset

Motif DE_36h DE_36h-RXRG_MA1556.1 14 bp overlap

Rarg 1 dataset

Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap

Rxra 1 dataset

Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 191 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 170 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 362 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 307 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 340 bp overlap

SMARCA4 4 datasets

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 231 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 501 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 278 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 210 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap

ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 238 bp overlap

SOX10 1 dataset

Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap

SOX13 1 dataset

Motif DE_36h DE_36h-SOX13_MA1120.2 7 bp overlap

SOX17_M 2 datasets

ChIP DE_D2 DED2-SOX17-M_Batch_II 295 bp overlap

SOX2 4 datasets

Motif DE_36h DE_36h-SOX2_MA0143.5 7 bp overlap

ChIP HNSC GSE69479.SOX2.HNSC 854 bp overlap

ChIP hESC GSE18292.SOX2.hESC 114 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 322 bp overlap

SOX21 1 dataset

Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap

SOX9 1 dataset

Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap

SP1 1 dataset

Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap

SP4 1 dataset

Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap

SP5 2 datasets

Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap

Sox1 1 dataset

Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap

Sox11 1 dataset

Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap

Sox3 1 dataset

Motif DE_36h DE_36h-Sox3_MA0514.3 7 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 390 bp overlap

TBX19 1 dataset

Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap

TBXT 1 dataset

Motif DE_36h DE_36h-TBXT_MA0009.2 16 bp overlap

TP53 1 dataset

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 395 bp overlap

VENTX 1 dataset

Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap

ZBTB17 1 dataset

Motif DE_60h DE_60h-ZBTB17_MA2102.1 8 bp overlap

ZFP14 1 dataset

Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap

ZFP57 1 dataset

ChIP hESC GSE115387.ZFP57.hESC 195 bp overlap

ZNF135 1 dataset

Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap

ZNF175 1 dataset

Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap

ZNF189 1 dataset

Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap

ZNF341 1 dataset

Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap

ZNF354C 1 dataset

Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap

ZNF558 1 dataset

Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap

ZNF677 1 dataset

Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap

ZNF770 1 dataset

Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap

ZNF8 1 dataset

Motif DE_36h DE_36h-ZNF8_MA1718.1 20 bp overlap

ZNF85 1 dataset

Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap

Zfp961 1 dataset

Motif DE_36h DE_36h-Zfp961_MA2126.1 8 bp overlap

Zic1::Zic2 1 dataset

Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap